NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38773.1 Public Mus musculus 4 Mup6 23 108 98 CCDS HistoryNCBI Gene:620807Re-query CCDS DB by CCDS ID:38773.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107517.7 ENSMUSP00000103141.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107517.7Link to Ensembl Protein Viewer:ENSMUSP00000103141.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107517Re-query CCDS DB by Protein ID:ENSMUSP00000103141
Original member Current member EBI ENSMUST00000107520.1 ENSMUSP00000103144.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107520.1Link to Ensembl Protein Viewer:ENSMUSP00000103144.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107520Re-query CCDS DB by Protein ID:ENSMUSP00000103144
Original member Current member NCBI NM_001081285.2 NP_001074754.1 Accepted alive Link to Nucleotide Sequence:NM_001081285.2Link to Protein Sequence:NP_001074754.1Re-query CCDS DB by Nucleotide ID:NM_001081285Re-query CCDS DB by Protein ID:NP_001074754Link to BLAST:NP_001074754.1

Chromosomal Locations for CCDS 38773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 60003549 60003641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60003978 60004111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60004814 60004887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60005472 60005582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60005922 60006023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 60006189 60006214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGAAGCTGCTGCTGCTGTGTTTGGGACTGATCCTAGTCTGTGTCCATGCAGAAGAAGCTAGTTCTATGG
GAAGGAACTTTAATGTAGAAAAGATTAATGGGGAGTGGTATACTATTATCCTGGCCTCTGACAAAAGAGC
AAAGATAGAAGAACATGGCATCATGAGACTTTTTGTGGAGCACATTCATGTCTTGGAGAATTCCTTAGGT
TTTAAATTCCATACTGTTATAGATGAAGAGTGCTCCGAAATATTTTTGGTTGCTGACAAAACAGAAAAGG
CTGGTGAATATTCTGTGACATATGATGGATTCAAAAAATTTACAGTACTTAAGACAGACTATGATAATTA
TATTATGTTTCATCTCATTAATGAAATGAATGGGGAAACCTTCCAGCTGATGTCGCTCTATGGCCGAGAA
CCAGATTTGAATTCAGATATCAAAGAAAAGTTTGTAAAACTTTGTGAGGAGCATGGAATCATTAGAGAGA
ATATCATTGACTTCACCAAAACCAATCGCTGCCTCCAGGCCCGAGAATGA

Translation (179 aa):
MKLLLLCLGLILVCVHAEEASSMGRNFNVEKINGEWYTIILASDKRAKIEEHGIMRLFVEHIHVLENSLG
FKFHTVIDEECSEIFLVADKTEKAGEYSVTYDGFKKFTVLKTDYDNYIMFHLINEMNGETFQLMSLYGRE
PDLNSDIKEKFVKLCEEHGIIRENIIDFTKTNRCLQARE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH