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Report for CCDS30354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30354.1 Public Mus musculus X Gm6377 23 108 98 CCDS HistoryNCBI Gene:622976Re-query CCDS DB by CCDS ID:30354.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30354.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060013.3 ENSMUSP00000049931.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060013.3Link to Ensembl Protein Viewer:ENSMUSP00000049931.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060013Re-query CCDS DB by Protein ID:ENSMUSP00000049931
Original member Current member NCBI NM_001037917.2 NP_001033006.1 Accepted alive Link to Nucleotide Sequence:NM_001037917.2Link to Protein Sequence:NP_001033006.1Re-query CCDS DB by Nucleotide ID:NM_001037917Re-query CCDS DB by Protein ID:NP_001033006Link to BLAST:NP_001033006.1

Chromosomal Locations for CCDS 30354.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 109197815 109198726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGCTTGGAGAAGCCTTCCTAACTAAATTCCTCTACAAAGAACAGAGACATGCAAAACTTTACAAACCAC
TA
AGATGTAAGAAGACATCAAATGACAAAAAGGAAAATTGGGAAAATAAGCTTTTAGATACACCGGACAA
T
TCACTTTCCCCTTTAAAGACTGGAAGCCAAGAGAAAGTTATAGAAGGAAGTGTAACTGAACAAGACAAT
GAT
TCATCTCAAATCAAATCTATGGATGAGCTACCTGTTGCAAAATGCAAATGTACACCTCTTCCAGGAA
AT
GTATCTGTTGCATTGCCCATTCCAAAGAGGGGACAGGAGGAAACACAACTGGATTTATATCGATCTTG
G
TCATGTACAAGTATTTGCCAGAATTATCCTGACCTACAGATAGGAGGTGACCACATTAGAAACATGTAT
GAT
TCTGGTTGCTTTGTGGAACACACATATGATGATGTTTGTAATGGTCCTCTTTTACTTTCAGTGGATA
TA
CCATTGGGCCACTCTCCTAAAATGGAGCCTCTAGAGAAAACGTCTACCTCAAAATTATTCAATGGTGA
T
GAAATTCGAGAAAAAAGCATGCTATTACATAAGCAACCCCTCTCTAATTCTATGCTTAATAATTATATT
GAA
AGAAAGGTGGATGAACTCTACAAACAGTTTTTGGAAGAAAATCTTACCAGGTGCCTCTCTATAACCA
AC
CTCATGACTTCTAGCATACTGATGAATAATGTCAATCAAATTAGCCTTCAAATCTCTCAGGAGCAGAA
C
ATAGAGGCATCCAAAGCCCGAGAAGCCCTTCTCCACTCTTTAGCACTATGCAATCTTCGTAATGTTTCC
CAC
AGAAACAGTACTGAATTAAGTACTCCTAACTTACAAATATCAAACCAAGCTAGTCGGGAATTTGTAT
GA


Translation (303 aa):
MLGEAFLTKFLYKEQRHAKLYKPLRCKKTSNDKKENWENKLLDTPDNSLSPLKTGSQEKVIEGSVTEQDN
D
SSQIKSMDELPVAKCKCTPLPGNVSVALPIPKRGQEETQLDLYRSWSCTSICQNYPDLQIGGDHIRNMY
D
SGCFVEHTYDDVCNGPLLLSVDIPLGHSPKMEPLEKTSTSKLFNGDEIREKSMLLHKQPLSNSMLNNYI
E
RKVDELYKQFLEENLTRCLSITNLMTSSILMNNVNQISLQISQEQNIEASKAREALLHSLALCNLRNVS
H
RNSTELSTPNLQISNQASREFV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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