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Report for CCDS12800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12800.1 Public Homo sapiens 19 CLEC11A 24 110 108 CCDS HistoryNCBI Gene:6320Re-query CCDS DB by CCDS ID:12800.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12800.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250340.9 ENSP00000250340.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250340.9Link to Ensembl Protein Viewer:ENSP00000250340.3Re-query CCDS DB by Nucleotide ID:ENST00000250340Re-query CCDS DB by Protein ID:ENSP00000250340
Original member Current member NCBI NM_002975.3 NP_002966.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002975.3Link to Protein Sequence:NP_002966.1Re-query CCDS DB by Nucleotide ID:NM_002975Re-query CCDS DB by Protein ID:NP_002966Link to BLAST:NP_002966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002966.1 323 Q9Y240 323 100% 0 0

Chromosomal Locations for CCDS 12800.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 50723526 50723672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50723905 50724091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50724410 50724601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50725022 50725467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGCAGGCAGCCTGGCTTTTGGGGGCTTTGGTGGTCCCCCAGCTCTTGGGCTTTGGCCATGGGGCTCGGG
GAGCAGAGAGGGAGTGGGAGGGAGGCTGGGGAGGTGCCCAGGAGGAGGAGCGGGAGAGGGAGGCCCTGAT
GCTGAAGCATCTGCAGGAAGCCCTAGGACTGCCTGCTGGGAGGGGGGATGAGAATCCTGCCGGAACTGTT
GAGGGAAAAGAGGACTGGGAGATGGAGGAGGACCAGGGGGAGGAAGAGGAGGAGGAAGCAACGCCAACCC
CATCCTCCGGCCCCAGCCCCTCTCCCACCCCTGAGGACATCGTCACTTACATCCTGGGCCGCCTGGCCGG
CCTGGACGCAGGCCTGCACCAGCTGCACGTCCGTCTGCACGCGTTGGACACCCGCGTGGTCGAGCTGACC
CAGGGGCTGCGGCAGCTGCGGAACGCGGCAGGCGACACCCGCGATGCCGTGCAAGCCCTGCAGGAGGCGC
AGGGTCGCGCCGAGCGCGAGCACGGCCGCTTGGAGGGCTGCCTGAAGGGGCTGCGCCTGGGCCACAAGTG
CTTCCTGCTCTCGCGCGACTTCGAAGCTCAGGCGGCGGCGCAGGCGCGGTGCACGGCGCGGGGCGGGAGC
CTGGCGCAGCCGGCAGACCGCCAGCAGATGGAGGCGCTCACTCGGTACCTGCGCGCGGCGCTCGCTCCCT
ACAACTGGCCCGTGTGGCTGGGCGTGCACGATCGGCGCGCCGAGGGCCTCTACCTCTTCGAAAACGGCCA
GCGCGTGTCCTTCTTCGCCTGGCATCGCTCACCCCGCCCCGAGCTCGGCGCCCAGCCCAGCGCCTCGCCG
CATCCGCTCAGCCCGGACCAGCCCAACGGTGGCACGCTCGAGAACTGCGTGGCGCAGGCCTCTGACGACG
GCTCCTGGTGGGACCACGACTGCCAGCGGCGTCTCTACTACGTCTGCGAGTTCCCCTTCTAG

Translation (323 aa):
MQAAWLLGALVVPQLLGFGHGARGAEREWEGGWGGAQEEEREREALMLKHLQEALGLPAGRGDENPAGTV
EGKEDWEMEEDQGEEEEEEATPTPSSGPSPSPTPEDIVTYILGRLAGLDAGLHQLHVRLHALDTRVVELT
QGLRQLRNAAGDTRDAVQALQEAQGRAEREHGRLEGCLKGLRLGHKCFLLSRDFEAQAAAQARCTARGGS
LAQPADRQQMEALTRYLRAALAPYNWPVWLGVHDRRAEGLYLFENGQRVSFFAWHRSPRPELGAQPSASP
HPLSPDQPNGGTLENCVAQASDDGSWWDHDCQRRLYYVCEFPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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