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Report for CCDS11017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11017.1 Public Homo sapiens 17 SRR 24 110 108 CCDS HistoryNCBI Gene:63826Re-query CCDS DB by CCDS ID:11017.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344595.10 ENSP00000339435.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344595.10Link to Ensembl Protein Viewer:ENSP00000339435.5Re-query CCDS DB by Nucleotide ID:ENST00000344595Re-query CCDS DB by Protein ID:ENSP00000339435
Original member Current member NCBI NM_021947.3 NP_068766.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021947.3Link to Protein Sequence:NP_068766.1Re-query CCDS DB by Nucleotide ID:NM_021947Re-query CCDS DB by Protein ID:NP_068766Link to BLAST:NP_068766.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068766.1 340 Q9GZT4 340 100% 0 0

Chromosomal Locations for CCDS 11017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2315561 2315728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2317870 2317996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2318826 2318929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2321306 2321425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2321542 2321616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2323136 2323345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2323655 2323873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGTGTGCTCAGTATTGCATCTCCTTTGCTGATGTTGAAAAAGCTCATATCAACATTCGAGATTCTATCC
ACCTCACACCAGTGCTAACAAGCTCCATTTTGAATCAACTAACAGGGCGCAATCTTTTCTTCAAATGTGA
ACTCTTCCAGAAAACAGGATCTTTTAAGATTCGTGGTGCTCTCAATGCCGTCAGAAGCTTGGTTCCTGAT
GCTTTAGAAAGGAAGCCGAAAGCTGTTGTTACTCACAGCAGTGGAAACCATGGCCAGGCTCTCACCTATG
CTGCCAAATTGGAAGGAATTCCTGCTTATATTGTGGTGCCCCAGACAGCTCCAGACTGTAAAAAACTTGC
AATACAAGCCTACGGAGCGTCAATTGTATACTGTGAACCTAGTGATGAGTCCAGAGAAAATGTTGCAAAA
AGAGTTACAGAAGAAACAGAAGGCATCATGGTACATCCCAACCAGGAGCCTGCAGTGATAGCTGGACAAG
GGACAATTGCCCTGGAAGTGCTGAACCAGGTTCCTTTGGTGGATGCACTGGTGGTACCTGTAGGTGGAGG
AGGAATGCTTGCTGGAATAGCAATTACAGTTAAGGCTCTGAAACCTAGTGTGAAGGTATATGCTGCTGAA
CCCTCAAATGCAGATGACTGCTACCAGTCCAAGCTGAAGGGGAAACTGATGCCCAATCTTTATCCTCCAG
AAACCATAGCAGATGGTGTCAAATCCAGCATTGGCTTGAACACCTGGCCTATTATCAGGGACCTTGTGGA
TGATATCTTCACTGTCACAGAGGATGAAATTAAGTGTGCAACCCAGCTGGTGTGGGAGAGGATGAAACTA
CTCATTGAACCTACAGCTGGTGTTGGAGTGGCTGCTGTGCTGTCTCAACATTTTCAAACTGTTTCCCCAG
AAGTAAAGAACATTTGTATTGTGCTCAGTGGTGGAAATGTAGACTTAACCTCCTCCATAACTTGGGTGAA
GCAGGCTGAAAGGCCAGCTTCTTATCAGTCTGTTTCTGTTTAA

Translation (340 aa):
MCAQYCISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPD
ALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAK
RVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAE
PSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKL
LIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTSSITWVKQAERPASYQSVSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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