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Report for CCDS36694.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36694.1 Public Mus musculus 13 Ctsm 23 108 98 CCDS HistoryNCBI Gene:64139Re-query CCDS DB by CCDS ID:36694.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36694.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099451.3 ENSMUSP00000097050.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099451.3Link to Ensembl Protein Viewer:ENSMUSP00000097050.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099451Re-query CCDS DB by Protein ID:ENSMUSP00000097050
Original member Current member EBI ENSMUST00000223778.1 ENSMUSP00000153101.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223778.1Link to Ensembl Protein Viewer:ENSMUSP00000153101.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223778Re-query CCDS DB by Protein ID:ENSMUSP00000153101
Original member Current member NCBI NM_001360721.1 NP_001347650.1 Accepted alive Link to Nucleotide Sequence:NM_001360721.1Link to Protein Sequence:NP_001347650.1Re-query CCDS DB by Nucleotide ID:NM_001360721Re-query CCDS DB by Protein ID:NP_001347650Link to BLAST:NP_001347650.1
Original member Current member NCBI NM_022326.4 NP_071721.2 Accepted alive Link to Nucleotide Sequence:NM_022326.4Link to Protein Sequence:NP_071721.2Re-query CCDS DB by Nucleotide ID:NM_022326Re-query CCDS DB by Protein ID:NP_071721Link to BLAST:NP_071721.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347650.1 333 Q9JL96 333 99.6997% 0 1
NP_071721.2 333 Q9JL96 333 99.6997% 0 1

Chromosomal Locations for CCDS 36694.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 61536555 61536654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61537695 61537812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61538384 61538546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61538906 61539130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61539551 61539697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61539794 61539916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61540188 61540313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGACTTCTGCTATCTTCCTGGCCATGCTCTGCTTGGGAATGGCTTTACCATCACCAGCACCTGATCCCA
TTTTGGATGTTGAATGGCAGAAATGGAAAATAAAATATGGAAAAGCATACAGTCTGGAGGAAGAAGGACA
GAAGAGAGCAGTATGGGAAGACAATATGAAAAAGATCAAACTGCACAATGGGGAGAATGGCCTGGGGAAG
CATGGTTTCACCATGGAAATGAATGCCTTTGGTGACATGACACTTGAAGAATTTAGGAAAGTGATGATTG
AAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGTTAACCTGCCCAAGTT
TATAAACTGGAAAAAGAGAGGCTATGTCACTCCTGTGCAGACACAGGGCAGATGTAATTCTTGTTGGGCT
TTTTCTGTGACTGGTGCCATAGAAGGACAGATGTTCCGGAAAACAGGTCAACTGATCCCTCTGAGTGTAC
AGAACCTTGTGGACTGTTCTAGGCCTCAAGGCAACTGGGGCTGTTATTTGGGCAATACATACCTTGCATT
GCACTATGTGATGGAAAATGGAGGTCTAGAGTCTGAGGCAACCTATCCTTATGAAGAAAAGGATGGATCA
TGCAGGTACAGTCCAGAAAATTCTACTGCTAATATAACAGGCTTTGAGTTTGTTCCAAAGAATGAGGATG
CCCTAATGAATGCTGTGGCAAGTATAGGGCCCATTTCTGTTGCAATCGATGCAAGGCATGCATCTTTCCT
GTTCTATAAAAGAGGTATATATTATGAGCCAAACTGCAGTAGCTCTGTTGTCACACATTCTATGTTACTA
GTTGGCTATGGCTTTACAGGAAGAGAATCAGATGGCAGGAAATACTGGCTGGTCAAGAACAGCATGGGTA
CACAATGGGGCAATAAAGGCTATATGAAGATTTCCAGAGACAAGGGAAACCACTGTGGAATTGCTACATA
TGCCCTTTACCCCAGAGTGTGA

Translation (333 aa):
MTSAIFLAMLCLGMALPSPAPDPILDVEWQKWKIKYGKAYSLEEEGQKRAVWEDNMKKIKLHNGENGLGK
HGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKRLSVNLPKFINWKKRGYVTPVQTQGRCNSCWA
FSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRPQGNWGCYLGNTYLALHYVMENGGLESEATYPYEEKDGS
CRYSPENSTANITGFEFVPKNEDALMNAVASIGPISVAIDARHASFLFYKRGIYYEPNCSSSVVTHSMLL
VGYGFTGRESDGRKYWLVKNSMGTQWGNKGYMKISRDKGNHCGIATYALYPRV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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