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Report for CCDS41841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41841.1 Public Homo sapiens 12 MAP1LC3B2 24 110 108 CCDS HistoryNCBI Gene:643246Re-query CCDS DB by CCDS ID:41841.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000556529.4 ENSP00000450524.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000556529.4Link to Ensembl Protein Viewer:ENSP00000450524.1Re-query CCDS DB by Nucleotide ID:ENST00000556529Re-query CCDS DB by Protein ID:ENSP00000450524
Original member Current member NCBI NM_001085481.3 NP_001078950.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085481.3Link to Protein Sequence:NP_001078950.1Re-query CCDS DB by Nucleotide ID:NM_001085481Re-query CCDS DB by Protein ID:NP_001078950Link to BLAST:NP_001078950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078950.1 125 A6NCE7 125 100% 0 0

Chromosomal Locations for CCDS 41841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 116575943 116576320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGCCGTCGGAGAAGACCTTCAAGCAGCGGCGCACCTTCGAACAAAGAGTAGAAGATGTCCGACTTATTC
GAGAGCAGCATCCAACCAAAATCCCGGTGATAATAGAACGATACAAGGGTGAGAAGCAGCTTCCTGTTCT
GGATAAAACAAAGTTCCTTGTACCTGACCATGTCAACATGAGTGAGCTCATCAAGATAATTAGAAGGCGC
TTACAGCTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACACAGCATGGTCAGCGTCTCCACAC
CAATCTCAGAGGTGTATGAGAGTGAGAAAGATGAAGATGGATTCCTGTACATGGTCTGTGCCTCCCAGGA
GACGTTCGGGATGAAATTGTCAGTGTAA

Translation (125 aa):
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRR
LQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFGMKLSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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