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Report for CCDS6452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6452.1 Public Homo sapiens 9 SLC1A1 24 110 108 CCDS HistoryNCBI Gene:6505Re-query CCDS DB by CCDS ID:6452.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262352.8 ENSP00000262352.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262352.8Link to Ensembl Protein Viewer:ENSP00000262352.3Re-query CCDS DB by Nucleotide ID:ENST00000262352Re-query CCDS DB by Protein ID:ENSP00000262352
Original member Current member NCBI NM_004170.6 NP_004161.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004170.6Link to Protein Sequence:NP_004161.4Re-query CCDS DB by Nucleotide ID:NM_004170Re-query CCDS DB by Protein ID:NP_004161Link to BLAST:NP_004161.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004161.4 524 P43005 524 100% 0 0

Chromosomal Locations for CCDS 6452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4490680 4490770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4544567 4544707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4561449 4561541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4564344 4564458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4566047 4566089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4567669 4567767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4572204 4572388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4573907 4574014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4576001 4576123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4576569 4576763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4583038 4583172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4585312 4585558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGGGGAAACCGGCGAGGAAAGGATGCGAGTGGAAGCGCTTCCTGAAGAATAACTGGGTGTTGCTGTCCA
CCGTGGCCGCGGTGGTGCTAGGCATTACCACAGGAGTCTTGGTTCGAGAACACAGCAACCTCTCAACTCT
AGAGAAATTCTACTTTGCTTTTCCTGGAGAAATTCTAATGCGGATGCTGAAACTCATCATTTTGCCATTA
ATTATATCCAGCATGATTACAGGTGTTGCTGCACTGGATTCCAACGTATCCGGAAAAATTGGTCTGCGCG
CTGTCGTGTATTATTTCTGTACCACTCTCATTGCTGTTATTCTAGGTATTGTGCTGGTGGTGAGCATCAA
GCCTGGTGTCACCCAGAAAGTGGGTGAAATTGCGAGGACAGGCAGCACCCCTGAAGTCAGTACGGTGGAT
GCCATGTTAGATCTCATCAGGAATATGTTCCCTGAGAATCTTGTCCAGGCCTGTTTTCAGCAGTACAAAA
CTAAGCGTGAAGAAGTGAAGCCTCCCAGCGATCCAGAGATGAACATGACAGAAGAGTCCTTCACAGCTGT
CATGACAACTGCAATTTCCAAGAACAAAACAAAGGAATACAAAATTGTTGGCATGTATTCAGATGGCATA
AACGTCCTGGGCTTGATTGTCTTTTGCCTTGTCTTTGGACTTGTCATTGGAAAAATGGGAGAAAAGGGAC
AAATTCTGGTGGATTTCTTCAATGCTTTGAGTGATGCAACCATGAAAATCGTTCAGATCATCATGTGTTA
TATGCCACTAGGTATTTTGTTCCTGATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGC
AAGCTGGGCCTTTACATGGCCACAGTCCTGACTGGGCTTGCAATCCACTCCATTGTAATTCTCCCGCTGA
TATATTTCATAGTCGTACGAAAGAACCCTTTCCGATTTGCCATGGGAATGGCCCAGGCTCTCCTGACAGC
TCTCATGATCTCTTCCAGTTCAGCAACACTGCCTGTCACCTTCCGCTGTGCTGAAGAAAATAACCAGGTG
GACAAGAGGATCACTCGATTCGTGTTACCCGTTGGTGCAACAATCAACATGGATGGGACTGCGCTCTATG
AAGCAGTGGCAGCGGTGTTTATTGCACAGTTGAATGACCTGGACTTGGGCATTGGGCAGATCATCACCAT
CAGTATCACGGCCACATCTGCCAGCATCGGAGCTGCTGGCGTGCCCCAGGCTGGCCTGGTGACCATGGTG
ATTGTGCTGAGTGCCGTGGGCCTGCCCGCCGAGGATGTCACCCTGATCATTGCTGTCGACTGGCTCCTGG
ACCGGTTCAGGACCATGGTCAACGTCCTTGGTGATGCTTTTGGGACGGGCATTGTGGAAAAGCTCTCCAA
GAAGGAGCTGGAGCAGATGGATGTTTCATCTGAAGTCAACATTGTGAATCCCTTTGCCTTGGAATCCACA
ATCCTTGACAACGAAGACTCAGACACCAAGAAGTCTTATGTCAATGGAGGCTTTGCAGTAGACAAGTCTG
ACACCATCTCATTCACCCAGACCTCACAGTTCTAG

Translation (524 aa):
MGKPARKGCEWKRFLKNNWVLLSTVAAVVLGITTGVLVREHSNLSTLEKFYFAFPGEILMRMLKLIILPL
IISSMITGVAALDSNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVD
AMLDLIRNMFPENLVQACFQQYKTKREEVKPPSDPEMNMTEESFTAVMTTAISKNKTKEYKIVGMYSDGI
NVLGLIVFCLVFGLVIGKMGEKGQILVDFFNALSDATMKIVQIIMCYMPLGILFLIAGKIIEVEDWEIFR
KLGLYMATVLTGLAIHSIVILPLIYFIVVRKNPFRFAMGMAQALLTALMISSSSATLPVTFRCAEENNQV
DKRITRFVLPVGATINMDGTALYEAVAAVFIAQLNDLDLGIGQIITISITATSASIGAAGVPQAGLVTMV
IVLSAVGLPAEDVTLIIAVDWLLDRFRTMVNVLGDAFGTGIVEKLSKKELEQMDVSSEVNIVNPFALEST
ILDNEDSDTKKSYVNGGFAVDKSDTISFTQTSQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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