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Report for CCDS42659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42659.1 Public Homo sapiens 2 FAM228A 24 110 108 CCDS HistoryNCBI Gene:653140Re-query CCDS DB by CCDS ID:42659.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42659.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295150.8 ENSP00000295150.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295150.8Link to Ensembl Protein Viewer:ENSP00000295150.3Re-query CCDS DB by Nucleotide ID:ENST00000295150Re-query CCDS DB by Protein ID:ENSP00000295150
Original member Current member NCBI NM_001040710.3 NP_001035800.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040710.3Link to Protein Sequence:NP_001035800.1Re-query CCDS DB by Nucleotide ID:NM_001040710Re-query CCDS DB by Protein ID:NP_001035800Link to BLAST:NP_001035800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035800.1 206 Q86W67 206 100% 0 0

Chromosomal Locations for CCDS 42659.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24175481 24175573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24177802 24177870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24183285 24183372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24183495 24183645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24190412 24190631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGCTGCCACCAAAACTGCGAGTTATGATGAACATTTCAGGCCAGAAAAGTTAAGAGAATGGCCGGAGC
CCGAGTCCGTTTCTTTAATGGAGGTATTAGCTAGAGAAGACATTGATGAAGCAGTATGTGCAATATTATT
TAAAGAAAATTCCATTGTGAAGGTTACAGTCCCACCATTTGTTGATCCTCTGTTTCAAAGACAGCAAGAG
GTGGATGAAGAGAGGAGAACTGGTCTTCAGTGTGAGACAGGAAAACGACATTCCATAAAAGAACTTGAAG
AAATAGAGAAGGCCAGGCTGCATGCCAGCTCGCCCTACTTCACTTTCACTTCACACTGTGTGATTCCAAA
AGAGTGGCATAAAGCCTCTGCAAGAGCCAGGAGTAAAACTTACAAATACAGTCCTGAAAAGCTCATCTAT
GCAGACAAGAAACAGAAAAGAAAAGAGAAAAAGACGGCCGACCTAAGTCAGGCTGCGTTTGAAAGGCAGT
TCCTTTCCTCAAAGCTCAGCCAGAAGAACAAAGTGGGTGAAAGAAAGGGTCTGGTGAGCAGAGGCCTGGG
GCGGGGCTGGCATGCAGGGCTTTGCAGCACCCACGAGCAGCACATACTGGTTCCAGAATGA

Translation (206 aa):
MAATKTASYDEHFRPEKLREWPEPESVSLMEVLAREDIDEAVCAILFKENSIVKVTVPPFVDPLFQRQQE
VDEERRTGLQCETGKRHSIKELEEIEKARLHASSPYFTFTSHCVIPKEWHKASARARSKTYKYSPEKLIY
ADKKQKRKEKKTADLSQAAFERQFLSSKLSQKNKVGERKGLVSRGLGRGWHAGLCSTHEQHILVPE


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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