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Report for CCDS20557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20557.1 Public Mus musculus 6 Ndufa9 23 108 98 CCDS HistoryNCBI Gene:66108Re-query CCDS DB by CCDS ID:20557.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000205002.2 ENSMUSP00000144904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205002.2Link to Ensembl Protein Viewer:ENSMUSP00000144904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205002Re-query CCDS DB by Protein ID:ENSMUSP00000144904
Original member Current member NCBI NM_025358.3 NP_079634.2 Accepted alive Link to Nucleotide Sequence:NM_025358.3Link to Protein Sequence:NP_079634.2Re-query CCDS DB by Nucleotide ID:NM_025358Re-query CCDS DB by Protein ID:NP_079634Link to BLAST:NP_079634.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079634.2 377 Q9DC69 377 100% 0 0

Chromosomal Locations for CCDS 20557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126822019 126822189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126824936 126825002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126827540 126827635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126832472 126832548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126834429 126834496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126836219 126836321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126840498 126840639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126842121 126842212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126844308 126844405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126844791 126844961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126849064 126849112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGGCGGCCGCCGTCCGCTTTCGGGTTGTTAGAGCGCTTCCAATGTCACGTCCTGCCATTACTGCAGCAG
CCACTTCTGTGTTCTGTGGCTCATCCCATCGCCAGCTTCACCATGCTGTCATACCTCACGGGAAAGGAGG
CCGCTCATCTGTCAGTGGAGTTGTGGCCACTGTGTTTGGGGCTACAGGATTCCTGGGTCGATACGTTGTT
AACCACCTTGGACGAATGGGGTCACAAGTGATCATACCATATCGGTGTGATGTATATGACATCATGCACC
TTCGTCTGATGGGTGACCTGGGCCAGCTTACCTTTCTGGAATGGGATGCACGAGACAAAGATTCTATCAG
GAAAGCAGTGCAGCACAGCAACGTGGTCATCAATCTTATTGGGCGGGAGTGGGAAACCAGAAACTTTGAT
TTTGAGGATGTTTTTGTGAATATTCCTCGAGCAATAGCTCAGGCATCCAAGGAAGCTGGGGTTGAGAGAT
TCATTCATGTTTCACACCTGAATGCCAGTATGAAGAGTTCTTCTAAGTCCTTGAGGAGCAAGGCAGTGGG
AGAGAAGGAAGTGAGAAGTGTGTTTCCTGAAGCCATCATCATACGGCCGTCTGACATTTTCGGAAGGGAG
GACAGGTTCCTTAATCACTTTGCAAATTATCGTTGGTTTCTTGCTGTGCCTCTTGTTTCTTTGGGCTTTA
AGACAGTGAAGCAGCCGGTGTATGTTGCAGATGTTTCCAAGGGGATTGTTAATGCGACTAAGGATCCAGA
TGCCGTAGGAAAAACCTTTGCCTTCACTGGGCCAAACCGGTACCTGCTCTTCCACTTGGTGAAGTACATC
TTTGGCATGACCCATCGGACCTTCATCCCTTACCCTTTGCCACTATTTGTGTATAGCTGGATTGGCAAAC
TCTTTGGGCTGAGTCCATTTGAGCCCTGGACGACGAAGGACAAGGTGGAGCGGATACATATCTCAGACGT
GATGCCGACCGACCTGCCTGGCCTGGAAGATCTTGGTGTTCAGCCCACACCACTGGAGCTCAAGTCCATT
GAGGTGCTACGGCGGCATCGTACCTACCGATGGCTGTCTTCTGAGATCGAGGAAACCAAGCCTGCCAAGA
CAGTCAACTATTAG

Translation (377 aa):
MAAAVRFRVVRALPMSRPAITAAATSVFCGSSHRQLHHAVIPHGKGGRSSVSGVVATVFGATGFLGRYVV
NHLGRMGSQVIIPYRCDVYDIMHLRLMGDLGQLTFLEWDARDKDSIRKAVQHSNVVINLIGREWETRNFD
FEDVFVNIPRAIAQASKEAGVERFIHVSHLNASMKSSSKSLRSKAVGEKEVRSVFPEAIIIRPSDIFGRE
DRFLNHFANYRWFLAVPLVSLGFKTVKQPVYVADVSKGIVNATKDPDAVGKTFAFTGPNRYLLFHLVKYI
FGMTHRTFIPYPLPLFVYSWIGKLFGLSPFEPWTTKDKVERIHISDVMPTDLPGLEDLGVQPTPLELKSI
EVLRRHRTYRWLSSEIEETKPAKTVNY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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