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Report for CCDS29309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29309.1 Public Mus musculus 18 Sec11c 23 108 98 CCDS HistoryNCBI Gene:66286Re-query CCDS DB by CCDS ID:29309.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025394.13 ENSMUSP00000025394.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025394.13Link to Ensembl Protein Viewer:ENSMUSP00000025394.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025394Re-query CCDS DB by Protein ID:ENSMUSP00000025394
Original member Current member NCBI NM_025468.2 NP_079744.1 Accepted alive Link to Nucleotide Sequence:NM_025468.2Link to Protein Sequence:NP_079744.1Re-query CCDS DB by Nucleotide ID:NM_025468Re-query CCDS DB by Protein ID:NP_079744Link to BLAST:NP_079744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079744.1 192 Q9D8V7 192 100% 0 0

Chromosomal Locations for CCDS 29309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65800625 65800711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65809445 65809554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65812665 65812814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65814838 65814957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65816821 65816878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65817460 65817513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGTTCGTGCGGGCGCCGTGGGGACGCATCTCCCCACGTCCAGCCTGGACATCTTTGGGGACCTGAGGA
AG
ATGAACAAACGACAGCTCTACTACCAGGTTTTAAACTTTGCCATGATCGTGTCTTCTGCGCTCATGAT
C
TGGAAAGGCCTGATTGTTCTCACGGGCAGCGAGAGTCCCATCGTGGTGGTACTCAGTGGCAGTATGGAG
CCG
GCCTTCCACAGAGGAGATCTGCTGTTCCTCACGAATTTCCGGGAGGACCCCATCAGAGCTGGTGAAA
TA
GTTGTTTTTAAGGTTGAAGGAAGAGACATTCCGATAGTTCACAGAGTAATCAAGGTTCATGAAAAAGA
T
AATGGTGACATCAAGTTTCTGACTAAAGGAGATAATAATGAAGTCGATGATAGAGGCTTGTACAAAGAA
GGC
CAGAACTGGCTGGAGAAGAAGGACGTGGTAGGAAGAGCTCGAGGGTTCTTACCTTATGTTGGCATGG
TC
ACCATCATAATGAATGACTATCCAAAATTCAAGTATGCTCTTTTGGCTGTGATGGGTGCATATGTGTT
A
CTAAAACGTGAATCCTAA


Translation (192 aa):
MVRAGAVGTHLPTSSLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSME
P
AFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHE
KDNGDIKFLTKGDNNEVDDRGLYKE
G
QNWLEKKDVVGRAR
GFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRES



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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