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Report for CCDS17898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17898.1 Public Mus musculus 3 2410004B18Rik 23 108 98 CCDS HistoryNCBI Gene:66421Re-query CCDS DB by CCDS ID:17898.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039571.13 ENSMUSP00000045376.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039571.13Link to Ensembl Protein Viewer:ENSMUSP00000045376.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039571Re-query CCDS DB by Protein ID:ENSMUSP00000045376
Original member Current member NCBI NM_025555.5 NP_079831.1 Accepted alive Link to Nucleotide Sequence:NM_025555.5Link to Protein Sequence:NP_079831.1Re-query CCDS DB by Nucleotide ID:NM_025555Re-query CCDS DB by Protein ID:NP_079831Link to BLAST:NP_079831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079831.1 180 Q9CWU4 180 100% 0 0

Chromosomal Locations for CCDS 17898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 145938059 145938328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145938898 145939096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145943797 145943870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCAGCCGAAGAGAAGGACCCGTTGAGCTACTTCGCGGCTTACGGGAGCAGCAGCTCCGACTCGTCGG
ATGAGAACAGCGAGCCGGAAGACGCGGGTCGCAAGGAGGCGGCCTCGGCTCCGACGACGGGCGGCCGCGG
GAAGCAGGCGGAGAAGCGGCTGCCCGGCCCGGACGAGCTGTTCCGCAGCGTGACCCGCCCGGCCTTCCTC
TACAACCCGCTCAACAAGCAGATCGACTGGGAGCGGCATGTGGTGAAAGCGCCGGAGGAGCCTCCAAAGG
AGTTCAAGATCTGGAAGTCCAACTGCGTGCCGCCCCCAGAGACCTACACTACTGAGAAGAAGCCGCCGCC
GCCAGAGCTGGACATGGCGATCAAATGGTCGAATATCTATGAAGACAATGGAGACGATGCCCCACAGAAC
GCCAAGAAAGCCAGGCTTCTGCCTGAAGGGGAGGAGACAGTGGAATCAGATGATGACAAAGATGAGCGGG
CATCTAAGATTCGCAGAGTGGAGCCAGGAGAAGCAGCCAAGAAGAAGAAGTAG

Translation (180 aa):
MAAEEKDPLSYFAAYGSSSSDSSDENSEPEDAGRKEAASAPTTGGRGKQAEKRLPGPDELFRSVTRPAFL
YNPLNKQIDWERHVVKAPEEPPKEFKIWKSNCVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQN
AKKARLLPEGEETVESDDDKDERASKIRRVEPGEAAKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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