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Report for CCDS25946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25946.1 Public Mus musculus 12 Rpl36al 23 108 98 CCDS HistoryNCBI Gene:66483Re-query CCDS DB by CCDS ID:25946.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054544.6 ENSMUSP00000059766.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054544.6Link to Ensembl Protein Viewer:ENSMUSP00000059766.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054544Re-query CCDS DB by Protein ID:ENSMUSP00000059766
Original member Current member EBI ENSMUST00000110619.1 ENSMUSP00000106249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110619.1Link to Ensembl Protein Viewer:ENSMUSP00000106249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110619Re-query CCDS DB by Protein ID:ENSMUSP00000106249
Original member Current member EBI ENSMUST00000110620.1 ENSMUSP00000106250.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110620.1Link to Ensembl Protein Viewer:ENSMUSP00000106250.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110620Re-query CCDS DB by Protein ID:ENSMUSP00000106250
Original member Current member NCBI NM_025589.4 NP_079865.1 Accepted alive Link to Nucleotide Sequence:NM_025589.4Link to Protein Sequence:NP_079865.1Re-query CCDS DB by Nucleotide ID:NM_025589Re-query CCDS DB by Protein ID:NP_079865Link to BLAST:NP_079865.1

Chromosomal Locations for CCDS 25946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69182816 69183136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGGTCAACGTACCAAAAACCCGAAGGACTTTCTGTAAGAAATGTGGCAAGCATCAGCCTCACAAAGTGA
CCCAGTATAAGAAGGGCAAGGATTCCCTGTATGCCCAAGGAAAGCGGCGCTACGATCGCAAGCAGAGTGG
CTACGGTGGGCAGACAAAGCCAATCTTTCGAAAGAAGGCCAAAACCACAAAGAAGATTGTGCTCAGGCTT
GAGTGTGTTGAGCCCAACTGCAGATCCAAGAGGATGCTGGCCATTAAGAGATGCAAGCATTTTGAACTGG
GAGGCGACAAGAAGAGGAAGGGCCAAGTGATCCAGTTCTAA

Translation (106 aa):
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRL
ECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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