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Report for CCDS29566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29566.1 Public Mus musculus 19 Asrgl1 23 108 98 CCDS HistoryNCBI Gene:66514Re-query CCDS DB by CCDS ID:29566.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049948.5 ENSMUSP00000051709.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049948.5Link to Ensembl Protein Viewer:ENSMUSP00000051709.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049948Re-query CCDS DB by Protein ID:ENSMUSP00000051709
Original member Current member NCBI NM_025610.3 NP_079886.2 Accepted alive Link to Nucleotide Sequence:NM_025610.3Link to Protein Sequence:NP_079886.2Re-query CCDS DB by Nucleotide ID:NM_025610Re-query CCDS DB by Protein ID:NP_079886Link to BLAST:NP_079886.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079886.2 326 Q8C0M9 326 100% 0 0

Chromosomal Locations for CCDS 29566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9113000 9113208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9114184 9114294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9116502 9116620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9118529 9118686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9119188 9119330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9134787 9134987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9135515 9135554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCGTGCGCCCGCGGCACCGTGGCGCCGCCAGTCCGAGCCTCCATCGATGTGAGTCTCGTGGTGGTAG
TCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGC
GGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACT
GTCCTGGAAAACGACCCAGAGTTCAACGCAGGTTATGGGTCTGTCCTGAATGTAAACGGTGATATTGAGA
TGGATGCTAGTATCATGGATGGGAAGGACCTGTCTGCAGGTGCAGTGTCTGCCGTGCGCTGTATCGCAAA
TCCCGTTAAACTTGCACGGCTTGTTATGGAAAAGACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAG
AAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGC
ACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAAAAACTCAGGAACTGTGGG
TGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATG
GTTGGCCGAGTTGGAGACTCGCCTTGCATAGGAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTT
CAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCA
AGGAAAGACCGTAGAGGAGGCTGCTCAGTTGGCATTGGATTACATGAAGTCAAAACTCAAAGGTCTAGGT
GGCCTCATCTTGGTCAACAAAACAGGAGACTGGGTGGCAAAGTGGACCTCTGCCTCCATGCCCTGGGCAG
CGGTGAAGAATGGCAAGCTGCAGGCCGGCATTGACCTCTGTGAGACCAGGACAAGGGACCTACCTTGCTA
G

Translation (326 aa):
MACARGTVAPPVRASIDVSLVVVVHGGGASNISANRKELVREGIARAATEGYKILKAGGSAVDAVEGAVT
VLENDPEFNAGYGSVLNVNGDIEMDASIMDGKDLSAGAVSAVRCIANPVKLARLVMEKTPHCFLTGHGAE
KFAEDMGIPQVPVEKLITERTKKHLEKEKLEKGAQNADCPKNSGTVGAVALDCRGNLAYATSTGGIVNKM
VGRVGDSPCIGAGGYADNNLGAVSTTGHGESILKVNLARLALFHVEQGKTVEEAAQLALDYMKSKLKGLG
GLILVNKTGDWVAKWTSASMPWAAVKNGKLQAGIDLCETRTRDLPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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