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Report for CCDS50396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50396.1 Public Mus musculus 19 Gm8369 23 108 98 CCDS HistoryNCBI Gene:666926Re-query CCDS DB by CCDS ID:50396.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079855.10 ENSMUSP00000132521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079855.10Link to Ensembl Protein Viewer:ENSMUSP00000132521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000079855Re-query CCDS DB by Protein ID:ENSMUSP00000132521
Original member Current member EBI ENSMUST00000188633.1 ENSMUSP00000141067.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188633.1Link to Ensembl Protein Viewer:ENSMUSP00000141067.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188633Re-query CCDS DB by Protein ID:ENSMUSP00000141067
Original member Current member NCBI NM_001164202.1 NP_001157674.1 Accepted alive Link to Nucleotide Sequence:NM_001164202.1Link to Protein Sequence:NP_001157674.1Re-query CCDS DB by Nucleotide ID:NM_001164202Re-query CCDS DB by Protein ID:NP_001157674Link to BLAST:NP_001157674.1

Chromosomal Locations for CCDS 50396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11502208 11502279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11504799 11504855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11508291 11508392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11511582 11511851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGATAAATATGGACCTTGACGGACCAGTCTTTTCAGTGATCTTACTGGTTCCAATTTGGGGACCAATAA
TGTTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTGGGTTTGGATGC
TTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCT
TCCTGCTGTAACTCCAGAGAGGTTCTTTTGGTGCTAACACCAAATCCTGCTGTGACAGTGATGGCATCTC
CCCGCCCCCCCTCCCCCGACACTTCAACCATTGCTACCATCAGAACACCAAGGGAAAAATGTTCCAGGAA
ATGTATACAAGAACCACCTGGGAGAAAGGCTCTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGCAAGCATTTCCCTGGGAAATTAATACTTCATTGCAGTGTGTTTGGTAGGAATTATC
AGGCATGCTGA

Translation (166 aa):
MINMDLDGPVFSVILLVPIWGPIMFIVSGSLSIAAGVKTTKSLGLDALKLVLNMLEFCLAVSISAFGCKA
SCCNSREVLLVLTPNPAVTVMASPRPPSPDTSTIATIRTPREKCSRKCIQEPPGRKALRVCVCVCVCVCV
CVCVCKHFPGKLILHCSVFGRNYQAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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