NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29741.1 Public Mus musculus 19 Trpd52l3 23 108 98 CCDS HistoryNCBI Gene:66745Re-query CCDS DB by CCDS ID:29741.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29741.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025727.5 ENSMUSP00000025727.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025727.5Link to Ensembl Protein Viewer:ENSMUSP00000025727.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025727Re-query CCDS DB by Protein ID:ENSMUSP00000025727
Original member Current member NCBI NM_025741.2 NP_080017.1 Accepted alive Link to Nucleotide Sequence:NM_025741.2Link to Protein Sequence:NP_080017.1Re-query CCDS DB by Nucleotide ID:NM_025741Re-query CCDS DB by Protein ID:NP_080017Link to BLAST:NP_080017.1

Chromosomal Locations for CCDS 29741.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 30003847 30004542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGACCAGTCTCACCTCGAGTCCTATCCCACTGGCCAGAAGTCTGAGCCTGCAGGCCTAGCCGTCAGCT
CCACCAGCCCCAACTGTTTCTCCTCAAACCAAGGATTGGACTCCGTCTACCAAGACCTGGACCTGGACTC
CCTGAATGAAGATCTTTCCTTGTCTGTTCCAGATGCCATGACAGAGACCTCTGCGTCCACAAATGAATCC
CGCCTAGCTTCAGAACCAGATCTGACGGAGGCTGAGCAACTGGAACTCAAATCTGAGCTCACTAAACTGG
AGGAAGAGATCTTAAACTTACGTGACCTGCTTGCAGCCAAAGAGAAGCGGTGTGGCGAACTCAAGAGGAA
GTTAGGCTGCGTGCCCTTGGTGGGACTGAGGCAGAATCTGTCAAAGAGCTGGCATGATGTTCAGGCCTCC
AACACCTACATGAAGCAGAAGACGTCAACTGCCCTGGCCTCGGTGGGTTCTGCCATCTGCAGGAAGCTTG
GAGATGTGAAGAATTCGTCCACGTTCAGATCTCTTGAAGGGCTGGTGGGAACAGTCAAGTCAAGAGTTGC
AGGTGGCAGAGAGCTCGGCAGTGGCCTTCTCCCTTCACCAGTGAGTGGCAGTGATCCACACTCGGCTCTG
GGGAGTGGATATGAAACTGTTGCAGGGCTTGATGAGCAACTGTTTTCTGTCCTGAAGCCAGAGTAA

Translation (231 aa):
MDQSHLESYPTGQKSEPAGLAVSSTSPNCFSSNQGLDSVYQDLDLDSLNEDLSLSVPDAMTETSASTNES
RLASEPDLTEAEQLELKSELTKLEEEILNLRDLLAAKEKRCGELKRKLGCVPLVGLRQNLSKSWHDVQAS
NTYMKQKTSTALASVGSAICRKLGDVKNSSTFRSLEGLVGTVKSRVAGGRELGSGLLPSPVSGSDPHSAL
GSGYETVAGLDEQLFSVLKPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH