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Report for CCDS26380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26380.1 Public Mus musculus 13 Acot13 23 108 98 CCDS HistoryNCBI Gene:66834Re-query CCDS DB by CCDS ID:26380.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006900.6 ENSMUSP00000006900.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006900.6Link to Ensembl Protein Viewer:ENSMUSP00000006900.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006900Re-query CCDS DB by Protein ID:ENSMUSP00000006900
Original member Current member NCBI NM_025790.2 NP_080066.1 Accepted alive Link to Nucleotide Sequence:NM_025790.2Link to Protein Sequence:NP_080066.1Re-query CCDS DB by Nucleotide ID:NM_025790Re-query CCDS DB by Protein ID:NP_080066Link to BLAST:NP_080066.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080066.1 140 Q9CQR4 140 100% 0 0

Chromosomal Locations for CCDS 26380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24818035 24818191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24820715 24820899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24831226 24831306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGAGCAGCATGACCCAGAACCTACGAGAAGTAATGAAGGTTATGTTCAAAGTTCCCGGTTTTGATAGAG
TTTTGGAAAAGGTGACGCTTGTCTCGGCTGCTCCTGAGAAACTAATCTGTGAGATGAAGGTGGAAGAGCA
GCATACTAATAAACTGGGCACGCTCCATGGAGGCTTGACAGCAACCTTAGTGGACAGCATCTCGACCATG
GCTCTAATGTGCACAGAAAGAGGAGCACCCGGAGTCAGTGTGGACATGAACATAACGTACATGTCACCTG
CTAAGATAGGAGAAGAAATAGTGATCACAGCACACATTCTGAAGCAAGGAAAGACACTTGCATTTGCCTC
AGTGGATCTGACCAACAAGACCACAGGAAAATTAATAGCACAAGGCAGACACACAAAACACCTGGGGAAC
TGA

Translation (140 aa):
MSSMTQNLREVMKVMFKVPGFDRVLEKVTLVSAAPEKLICEMKVEEQHTNKLGTLHGGLTATLVDSISTM
ALMCTERGAPGVSVDMNITYMSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHTKHLGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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