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Report for CCDS38975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38975.1 Public Mus musculus 4 Ctnnbip1 23 108 98 CCDS HistoryNCBI Gene:67087Re-query CCDS DB by CCDS ID:38975.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030839.12 ENSMUSP00000030839.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030839.12Link to Ensembl Protein Viewer:ENSMUSP00000030839.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030839Re-query CCDS DB by Protein ID:ENSMUSP00000030839
Original member Current member EBI ENSMUST00000105692.1 ENSMUSP00000101317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105692.1Link to Ensembl Protein Viewer:ENSMUSP00000101317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105692Re-query CCDS DB by Protein ID:ENSMUSP00000101317
Original member Current member NCBI NM_001141930.1 NP_001135402.1 Accepted alive Link to Nucleotide Sequence:NM_001141930.1Link to Protein Sequence:NP_001135402.1Re-query CCDS DB by Nucleotide ID:NM_001141930Re-query CCDS DB by Protein ID:NP_001135402Link to BLAST:NP_001135402.1
Original member Current member NCBI NM_023465.4 NP_075954.1 Accepted alive Link to Nucleotide Sequence:NM_023465.4Link to Protein Sequence:NP_075954.1Re-query CCDS DB by Nucleotide ID:NM_023465Re-query CCDS DB by Protein ID:NP_075954Link to BLAST:NP_075954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135402.1 81 Q9JJN6 81 100% 0 0
NP_075954.1 81 Q9JJN6 81 100% 0 0

Chromosomal Locations for CCDS 38975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149545736 149545831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149546402 149546492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149564205 149564263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGAACCGCGAGGGAGCACCCGGGAAGAGTCCGGAGGAGATGTACATTCAACAGAAGGTCCGCGTGCTGC
TCATGCTGAGGAAGATGGGGTCAAACCTGACCGCCAGTGAGGAGGAATTTCTGCGCACCTATGCTGGGGT
CGTCAGCAGCCAGCTCAGCCAGCTGCCACAGCACTCCATCGACCAGGGTGCAGAGGACGTGGTGATGGCG
TTTTCCAGATCGGAGACGGAAGACCGGAGGCAGTAG

Translation (81 aa):
MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVSSQLSQLPQHSIDQGAEDVVMA
FSRSETEDRRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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