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Report for CCDS29158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29158.1 Public Mus musculus 18 Slc35a4 23 108 98 CCDS HistoryNCBI Gene:67843Re-query CCDS DB by CCDS ID:29158.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036158.6 ENSMUSP00000036081.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036158.6Link to Ensembl Protein Viewer:ENSMUSP00000036081.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036158Re-query CCDS DB by Protein ID:ENSMUSP00000036081
Original member Current member EBI ENSMUST00000050476.10 ENSMUSP00000129718.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050476.10Link to Ensembl Protein Viewer:ENSMUSP00000129718.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000050476Re-query CCDS DB by Protein ID:ENSMUSP00000129718
Original member Current member EBI ENSMUST00000186538.6 ENSMUSP00000140615.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186538.6Link to Ensembl Protein Viewer:ENSMUSP00000140615.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186538Re-query CCDS DB by Protein ID:ENSMUSP00000140615
Original member Current member NCBI NM_001083317.1 NP_001076786.1 Accepted alive Link to Nucleotide Sequence:NM_001083317.1Link to Protein Sequence:NP_001076786.1Re-query CCDS DB by Nucleotide ID:NM_001083317Re-query CCDS DB by Protein ID:NP_001076786Link to BLAST:NP_001076786.1
Original member Current member NCBI NM_001360989.1 NP_001347918.1 Accepted alive Link to Nucleotide Sequence:NM_001360989.1Link to Protein Sequence:NP_001347918.1Re-query CCDS DB by Nucleotide ID:NM_001360989Re-query CCDS DB by Protein ID:NP_001347918Link to BLAST:NP_001347918.1
Original member Current member NCBI NM_026404.2 NP_080680.2 Accepted alive Link to Nucleotide Sequence:NM_026404.2Link to Protein Sequence:NP_080680.2Re-query CCDS DB by Nucleotide ID:NM_026404Re-query CCDS DB by Protein ID:NP_080680Link to BLAST:NP_080680.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076786.1 324 Q9D321 324 100% 0 0
NP_001347918.1 324 Q9D321 324 100% 0 0
NP_080680.2 324 Q9D321 324 100% 0 0

Chromosomal Locations for CCDS 29158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36682119 36683093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGAGTGTAGAAGATGGGGGCGTGCCAGGCCTAGCCCGCCCAAGACAGGCTCGCTGGACCCTGTTGCTCT
TCCTGTCCACTGCCATGTATGGTGCCCATGCACCGTTCTTAGCACTGTGCCATGTGGATGGCCGAGTGCC
CTTCCGGCCCTCCTCAGCTGTGTTACTCACTGAGCTGACCAAGCTCCTGTTGTGCGCCTTCTCCCTCCTG
GTAGGCTGGCAAACATGGCCCCAGGGCACGCCACCCTGGCGCCAGGCTGTGCCTTTTGCACTGTCAGCCC
TGCTCTATGGCGCCAACAACAACCTGGTGATTTATCTGCAGCGCTACATGGACCCCAGCACCTATCAGGT
GCTGAGCAATCTCAAGATTGGAAGCACAGCTCTATTGTACTGCCTCTGCCTTGGGCATCGTCTCTCTGCG
CGTCAGGGCTTGGCGCTGCTGCTGCTGATGGCTGCAGGAGCCTGCTATGCATCAGGTGGCTTTCAGGAAC
CTGTGAACACCCTTCCTGGGCCCGCGTCAGCAGCTGGAGCCCATCCCATGCCCTTGCATATCACTCCACT
GGGACTTCTGCTCCTCATCCTATACTGCCTCATCTCCGGCTTGTCCTCCGTGTACACAGAGCTGATCATG
AAGCGACAGCGGTTGCCCTTGGCTCTTCAGAACCTCTTCCTCTACACTTTTGGGGTGATCCTGAACTTTG
GACTGTATGCTGGCAGTGGCCCAGGCCCGGGCTTCCTGGAGGGCTTCTCTGGATGGGCAGTGCTTGTGGT
GCTGAACCAAGCAGTCAATGGGCTGCTCATGTCGGCTGTCATGAAGCATGGCAGCAGCATCACACGCCTC
TTCATCGTGTCCTGCTCGCTCGTGGTCAACGCTGTGCTGTCGGCGGTGCTGCTCCAGCTGCAGCTCACGG
CCATCTTCTTCCTGGCCGCACTGCTCATCGGTCTGGCTGTGTGCTTGTACTATGGTAGCCCCTAA

Translation (324 aa):
MSVEDGGVPGLARPRQARWTLLLFLSTAMYGAHAPFLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLL
VGWQTWPQGTPPWRQAVPFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTALLYCLCLGHRLSA
RQGLALLLLMAAGACYASGGFQEPVNTLPGPASAAGAHPMPLHITPLGLLLLILYCLISGLSSVYTELIM
KRQRLPLALQNLFLYTFGVILNFGLYAGSGPGPGFLEGFSGWAVLVVLNQAVNGLLMSAVMKHGSSITRL
FIVSCSLVVNAVLSAVLLQLQLTAIFFLAALLIGLAVCLYYGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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