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Report for CCDS37081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37081.1 Public Mus musculus 15 Trmt12 23 108 98 CCDS HistoryNCBI Gene:68260Re-query CCDS DB by CCDS ID:37081.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036937.8 ENSMUSP00000047831.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036937.8Link to Ensembl Protein Viewer:ENSMUSP00000047831.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036937Re-query CCDS DB by Protein ID:ENSMUSP00000047831
Original member Current member NCBI NM_026642.2 NP_080918.2 Accepted alive Link to Nucleotide Sequence:NM_026642.2Link to Protein Sequence:NP_080918.2Re-query CCDS DB by Nucleotide ID:NM_026642Re-query CCDS DB by Protein ID:NP_080918Link to BLAST:NP_080918.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080918.2 446 Q8BG71 446 100% 0 0

Chromosomal Locations for CCDS 37081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58872755 58874095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGAGAGAGAGTGTGAGGAGTCTGTAGTTGTCGCAGTTGTGACTGAGCCCCGGTTCACGCAGAGATACC
GAGACTACCTGGAGGAGCAGAAACTCTTGGACAGGCTGCACCGGGTGGCGAAGCTGCGGGATGGCGCGGT
GGCTCTGCCGGTGCTGGCGGAAAGCCTTTCTGAGCAGCATCTGCAGGAGCTGAGGGATCGCGTGGCCCCA
GGCAGCACTTGTGTGCTGACGCGGCTCCCGGATCCTCTTCCTTCCAAAAAGGCCCGGGTTCGTTCACCTG
CTCAGATACTGTGTCTGGAGGTGAGGCGTTGGGTGGAGGACCGCGGAGTGACGTGGTCCGCTGAGTTGGA
GGCAGATTTGCCCCGGTCTTGGCAACGGCATGGTGACCTAATGCTGCTTAGTGAAGACTGCTTCCAAGCC
ACGCTGTGGAAAGGTCTGGAGCCAGAACTCTGGGAGACTGTTGCCTCGGCCCTGGGAGTTCAACGTTTGG
CAAAACGAGGGCGGGTGCTACCTGATGGGACTCGAACTCCGTCAGTGACTCTGCTGCTGGGTGACCATGG
CTGGGTAGAGCATATGGATAATGGCATCCGGTATAAGTTTGATGTGACACAGTGCATGTTCTCCTTTGGA
AACATCACCGAGAAACTTCGAGTGGCGTCTCTGTCCTGTGCTGGAGAGGTGCTGGTGGATCTCTACGCAG
GGATTGGTTATTTTACATTGCCCTTCCTAGTTCATGCTGGCGCTGCCTTCGTACATGCCTGTGAATGGAA
TCCTCATGCTGTAGTTGCTTTAAGAAACAACTTGGAGATCAATGGAGTGGCAGACCGGTGCCAAATACAT
TTTGGGGACAACAGGAAACTGAAGCTCTCAGACATTGCAGATAGGGTGAACCTCGGGCTCATTCCCAGTT
CTAAAGAAGGCTGGCCCGTTGCCTGCCAAGTGCTTCGGAAGGACGTTGGGGGTATTCTGCATATCCACCA
AAATGTGGAGTCTTTCTCAGGAAAGACTCCACAGCCACCTGGAAGCAATAACGTGGAAAAAGAGCACTGG
CCTCGTCCCCAGAAAATCACCACTGATACACAGGGAAATGGAACTACTGAGAATTTCAGGGGGGAAATAT
CATCGGCCAACAAACCAGAGTGGTGGAGATGGGCAGAATCTGCAGAAACTCAGATCGCCTCTCTTCTTCA
TCAAGTGCATGGGAAACCATGGAGGACACGAATCTTGCATGTCCACCCAGTGAAATCTTACGCCCCTCAC
GTGGATCACATAGTCCTAGATCTAGAATGCCGGCCCCTGACCTCTAGTTGGCCAGAAGGAGTAGATTTAC
TGACACAGTAA

Translation (446 aa):
MERECEESVVVAVVTEPRFTQRYRDYLEEQKLLDRLHRVAKLRDGAVALPVLAESLSEQHLQELRDRVAP
GSTCVLTRLPDPLPSKKARVRSPAQILCLEVRRWVEDRGVTWSAELEADLPRSWQRHGDLMLLSEDCFQA
TLWKGLEPELWETVASALGVQRLAKRGRVLPDGTRTPSVTLLLGDHGWVEHMDNGIRYKFDVTQCMFSFG
NITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIH
FGDNRKLKLSDIADRVNLGLIPSSKEGWPVACQVLRKDVGGILHIHQNVESFSGKTPQPPGSNNVEKEHW
PRPQKITTDTQGNGTTENFRGEISSANKPEWWRWAESAETQIASLLHQVHGKPWRTRILHVHPVKSYAPH
VDHIVLDLECRPLTSSWPEGVDLLTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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