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Report for CCDS20231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20231.1 Public Mus musculus 6 Rmnd5a 23 108 98 CCDS HistoryNCBI Gene:68477Re-query CCDS DB by CCDS ID:20231.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002292.14 ENSMUSP00000002292.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002292.14Link to Ensembl Protein Viewer:ENSMUSP00000002292.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002292Re-query CCDS DB by Protein ID:ENSMUSP00000002292
Original member NCBI NM_001355745.1 NP_001342674.1 Updated not alive Link to Nucleotide Sequence:NM_001355745.1Link to Protein Sequence:NP_001342674.1Re-query CCDS DB by Nucleotide ID:NM_001355745Re-query CCDS DB by Protein ID:NP_001342674
Current member NCBI NM_001355745.2 NP_001342674.1 Accepted alive Link to Nucleotide Sequence:NM_001355745.2Link to Protein Sequence:NP_001342674.1Re-query CCDS DB by Nucleotide ID:NM_001355745Re-query CCDS DB by Protein ID:NP_001342674Link to BLAST:NP_001342674.1
Original member NCBI NM_024288.2 NP_077250.2 Updated not alive Link to Nucleotide Sequence:NM_024288.2Link to Protein Sequence:NP_077250.2Re-query CCDS DB by Nucleotide ID:NM_024288Re-query CCDS DB by Protein ID:NP_077250
Current member NCBI NM_024288.3 NP_077250.2 Accepted alive Link to Nucleotide Sequence:NM_024288.3Link to Protein Sequence:NP_077250.2Re-query CCDS DB by Nucleotide ID:NM_024288Re-query CCDS DB by Protein ID:NP_077250Link to BLAST:NP_077250.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342674.1 391 Q80YQ8 391 100% 0 0
NP_077250.2 391 Q80YQ8 391 100% 0 0

Chromosomal Locations for CCDS 20231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71393125 71393188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71394625 71394779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71396852 71396954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71398361 71398526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71399127 71399293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71413250 71413350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71414785 71414919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71429018 71429160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71439998 71440139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGATCAGTGCGTGACGGTGGAGCGCGAGCTGGAGAAGGTGCTGCACAAGTTCTCGGGCTACGGGCAGC
TGTGCGAGCGGGGCCTGGAGGAGCTCATCGACTACACCGGCGGCCTCAAGCACGAGATCCTGCAGAGCCA
CGGTCAAGATGCTGAATTATCAGGGACACTTTCACTTGTTCTGACACAGTGCTGCAAAAGAATAAAGGAC
ACTGTCCAGAAGTTGGCCTCTGACCACAAAGACATCCATAGCAGTGTTTCTCGAGTTGGAAAAGCCATTG
ATAAGAATTTTGATTCTGACATTAGCAGTGTGGGAATAGATGGCTGCTGGCAGGCAGACAGCCAACGGCT
TCTCAATGAGGTCATGGTGGAACACTTCTTCCGACAAGGAATGCTGGATGTAGCTGAGGAGCTTTGCCAG
GAATCTGGTCTGTCTGTAGACCCAAGTCAGAAAGAACCATTTGTGGAGTTAAATAGAATATTAGAAGCAT
TAAAAGTCAGAGTTCTAAGGCCTGCTCTCGAGTGGGCAGTATCAAACCGAGAAATGCTCATAGCCCAAAA
CAGTTCCTTGGAATTTAAGCTACACCGACTGTATTTTATTAGCTTGTTAATGGGTGGAACTACAAATCAG
CGAGAAGCCTTACAATATGCGAAAAATTTCCAGCCATTTGCCCTAAATCATCAAAAAGACATTCAGGTAT
TGATGGGAAGCCTCGTGTACCTGCGACAAGGGATTGAAAACTCACCATATGTTCACTTACTTGATGCAAA
CCAGTGGGCTGACATCTGTGACATCTTTACACGGGATGCTTGTGCCCTCCTGGGGCTCTCCGTGGAGTCT
CCTCTCAGTGTCAGTTTCTCAGCAGGTTGTGTGGCGCTGCCTGCGCTAATTAACATCAAAGCTGTGATTG
AGCAGAGGCAGTGTACTGGAGTTTGGAACCAGAAAGACGAATTACCTATTGAAGTGGACCTTGGTAAAAA
GTGCTGGTATCACTCCATATTTGCCTGTCCCATTCTTCGTCAGCAAACAACAGATAACAATCCACCCATG
AAATTGGTTTGTGGTCATATTATATCAAGAGACGCCCTGAATAAAATGTTTAATGGTAGCAAATTAAAAT
GTCCATATTGCCCAATGGAACAGAGTCCAGGAGATGCCAAACAGATATTTTTCTGA

Translation (391 aa):
MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLVLTQCCKRIKD
TVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQ
ESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQ
REALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVES
PLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPM
KLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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