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Report for CCDS35574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35574.1 Public Mus musculus 1 Sgo2a 23 108 98 CCDS HistoryNCBI Gene:68549Re-query CCDS DB by CCDS ID:35574.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027202.8 ENSMUSP00000027202.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027202.8Link to Ensembl Protein Viewer:ENSMUSP00000027202.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027202Re-query CCDS DB by Protein ID:ENSMUSP00000027202
Original member Current member NCBI NM_199007.2 NP_950172.1 Accepted alive Link to Nucleotide Sequence:NM_199007.2Link to Protein Sequence:NP_950172.1Re-query CCDS DB by Nucleotide ID:NM_199007Re-query CCDS DB by Protein ID:NP_950172Link to BLAST:NP_950172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950172.1 1164 Q7TSY8 1164 100% 0 0

Chromosomal Locations for CCDS 35574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 57998098 57998221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57999964 58000139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58001218 58001295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58002894 58002979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58013507 58013742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58015359 58017983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58019589 58019742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58024784 58024799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3495 nt):
ATGGAGTACCCAGGGATAAAAGTTGACACTGTTACCTCTGGAATTCAGAGACGAGTGAAGGGCAGAATTG
CAAAGACAAATTTGAATGTTTCTCTTGCTTCAAAGATCAAAGCAAAAATATTAAACAATTCTTCTATTTT
CAAGATCTCTCTAAAGCACAACAACAGAGCATTAGCGCGGGCCCTTAGTAAAGAGAAAGAGAATTCTCGA
AGAATTACTACCGAAAAGATGCAATTACAGAAAGAAGTAGAGAAACTGAATTTTGAGAATACCTTTCTTC
GCTTAAAGTTAAATACCTTGAATAAGAAGCTTGTAGAAATAGAATCGCATGTGAGCAATGATTTGTTAAC
TGCAATTGAAATAAGCAGTCTTTCTGAGTTCCACCAAGGTTCTTTTCTCCTGTCAGCTACCAAGAAACAA
AGGAACAGTAAGCAGTGCAAGCCTGCGCATCTTCCATATGCAAGAGTTCTGTTAACTTCAGAAAATGATG
ATGATGATGGTGCTGATGATAAATGGCAGACAAAGTGTAACAACAGAACTATATCAAAGACCTCACCTGA
TAGTACCTCTTCAGTATCAAGACAACCTTCATCCTTACATCAGTGCAATTTGAAAGCATTCCCTCCTAAA
GAAGATAATCAGAAGACATGTGGGTCAGGTCATTTAGAACATACTTCAAGTGTTGATATACTTCCTAATG
AGAGCCACTCAGATCAAAGTCCTAAGAGTTCTCTGAGTGAGATGAAAACTGCTCCATCTCCCAGCCTCAG
AAGGGAAAAATTATCACATGGTAATGTGACTATGAGGAAGAAGTGTGTGTCTTCAACTCCAGACATTCTG
TATGTGACAGATTTAGATCACCAACCAACTTCAAGTCCAGGATCAAATTGGAATAATGAGATACATGGTC
ATACTAATGAAACCAGCAATAACACGCAAAGAAATGCCGAGTGTTTTCTTGACTTACCTTCTGAGTCTTC
CAGTGAGCCTGACGCAAAGCGCATGGAGCTAGTGCAGAAGAACACCGATAGCTTTCACTTCCAGAAAACT
GTATATGATGCCGCTGATATGGAGTTAACTGCTACTGACATAGGCAAGATTGTAGCAGTTTCAAAAAGCA
AGAAAAATCAAAATAAGAAAAAGGCAGACTGTAGAAAGGAGACTTTCAGAAAAGTGAAAGGTGCAAGCTC
TGATAAAAAGAGAGAAAGCTCAAAGAGAGAATGTAAAGATGGTTCAGAAGTAGGTGCTGAGGAAGAGGCT
GATGCAGCCAGAGCAGAAAGAGGCGCTGGTGTCCTGGATGGCAGAGGGGATTCAGAAGAGCCAAACTGCA
TTTCCAGTACTGAGCAGCCATCTCAGGTAAACACGCAAAAGAAAAGAACCCTCCAGAACAGCTCAGATCA
GGAGAACATTCAAAATACGAAGAGGAGGCAAACATATACGACAGATGAGCAAGAGGAAACAAACCCTTTC
TCCAGACATTCAGTCAAATTTCTTCAAGATGGTAAATTTGATCTGTGTCAGAAAACCCTACATCATAATT
TAAGTAAGCCTTCTCGACAGACATTTGTGATTCGTAAGTCAGAAAAAGATAACTTATTTCCAAATCAAGA
AGATAAAGACACCATTTCTGAAAACCTAGAAGTTACAAATGAATTTCATATAGATGATCTTTCCATCGAA
GCTAATGAAAATGTATGTGACCATGAGACTCAGACAATGTTGGACTTGAAAAAGTCTGTCAGTGCTCAAC
AAAATCAAACAAAAATAAATAAGACTAAGCAGAAAATAAATCGAAGGACAAAAATAATTTCTGTCATGAG
CCAAGTATATGAGGACAATGATAAAGATATTCACGTCCTAGAAAAAGACAACTTTCCCTTTCATACCCAA
GCAAATAAAGAAACCACCAGTGGAAACCTAGAAAGTTCAAAAGAATTTGAATCACCTCTTCTTTTCACAA
GAGACAACGGAAGCTTACGTGACTGTAAGACCCAGAATGTTCTGGATCTGCACAAGCAAATTCCTGATCT
ATACCCTGATCGGAATGAGTCCCAGATTAGCAAAATCCCTAGGCAAAAAGTAAATCGCAAGACAGAAGTA
ATTTCTGGAGTGAAATGTTTTAGTAATGACCAAGGTGTTCATTGCTCAGAAAAGGATAAGTCTTTGTTAC
TACAAAAGGATAAAGACTTCCCAGGAACTTTAAAAGACTTAAGTGAGTTTGATACGCCTGCTTTTTGTAA
CAAAGATAGTGCAAAGTCGTGTGATTATAAGTCTGAAATGCTCTTGGGGTTGAAAAAACATGACCCTAAT
ATGCAACCTGCTTGTCAAGATGATTCAAAAGCAGGTAAGAAACTTAGACAAAAGGTAAATCGAAAAACAG
AAATAATTTCTAAAATCACCCAAATACATGAAAATGATAGAGGAAGTACACATGACTCATTAAATAAGAA
GCTCTGTCAGAAGGTTAATATATCAAAAATCATTTCTCAAATGAACCAAATATATGAGACTATTAATGAA
GATGGAAATGGCTTTAAAAGCTCTATCAAAGATTGCGAAGATATTAAAAGTTGTGACTTTGGGGAAATCA
ACAGTAATAAAAAGGAAAATTATGATCCAATTCAAGATCCTTGCACACTGGTTAAAAAAACAAAGAGAAA
GGGATCATGTAAAGCAGGGAGCAGTTTGGCAGGAGCTAAGAACAGGTGTGGTTTGCAGTTAACAGACTCT
TCCCAGGTACAGTCTGTCCCCTTAGACTCTGGCTTAAGACACCATCCAAACGAAGCAGATTCTGGTCCTG
GAGAGCAGACTAACCTGCCAAAGATGCAGAAACAAAGCGCTGGGAGGTCACTGGGAGATGCTTTCTCTGT
GAGTCTGGGAAAAGAAGGAAGCCGCCCAGCCAAAGCAGTTAGTAAAATGACACCCAAATCAAAGAAGAGA
AAGCTCCCTCTCGGTTGTTCTCCTGAAACCCACGGGACGGTGGAGATAACACCCAACACTGACCTCGCTA
AGGCTGTTGACTCCCAACAGACTGAGAAGGAGAACTATTTGGAGAAGGAGAAAATTGCCAAGAGGAAGCC
AGATTTTTGTACAAAGGTGTTGAAACCTTTATCTGAGACATGTTCATCTAACATAAAGAATTCTTCCTTG
GACAGTATGTGTAAGAGTTCGCTACCTTTGAGTATTTCTTCTAGAAAAACCCTGATGCTGGAAGAAAGTT
CTTCCCTGGAGAGTACATGCATCTTTCAAGTAGGTGATGCCGCTCATGAGAAGATAACGACAGGCACACG
TAATCCCCACCACAGGACACAGAAGTCGACACCGGGTAGCAGAACGTCCCTGGTCTTGGTGGATACCAGT
TCTGTTTCAGATACCAACCCTGCTAACCCCGAGAATGAGTCAGAAGGGCAGTCTTCACACCCAATGAGAA
GGAAAAGACAGTGCGTCCCTCTCAACCTGACAGAGCCAAGCCTTAGAAGCAAGATGAGGAGATAA

Translation (1164 aa):
MEYPGIKVDTVTSGIQRRVKGRIAKTNLNVSLASKIKAKILNNSSIFKISLKHNNRALARALSKEKENSR
RITTEKMQLQKEVEKLNFENTFLRLKLNTLNKKLVEIESHVSNDLLTAIEISSLSEFHQGSFLLSATKKQ
RNSKQCKPAHLPYARVLLTSENDDDDGADDKWQTKCNNRTISKTSPDSTSSVSRQPSSLHQCNLKAFPPK
EDNQKTCGSGHLEHTSSVDILPNESHSDQSPKSSLSEMKTAPSPSLRREKLSHGNVTMRKKCVSSTPDIL
YVTDLDHQPTSSPGSNWNNEIHGHTNETSNNTQRNAECFLDLPSESSSEPDAKRMELVQKNTDSFHFQKT
VYDAADMELTATDIGKIVAVSKSKKNQNKKKADCRKETFRKVKGASSDKKRESSKRECKDGSEVGAEEEA
DAARAERGAGVLDGRGDSEEPNCISSTEQPSQVNTQKKRTLQNSSDQENIQNTKRRQTYTTDEQEETNPF
SRHSVKFLQDGKFDLCQKTLHHNLSKPSRQTFVIRKSEKDNLFPNQEDKDTISENLEVTNEFHIDDLSIE
ANENVCDHETQTMLDLKKSVSAQQNQTKINKTKQKINRRTKIISVMSQVYEDNDKDIHVLEKDNFPFHTQ
ANKETTSGNLESSKEFESPLLFTRDNGSLRDCKTQNVLDLHKQIPDLYPDRNESQISKIPRQKVNRKTEV
ISGVKCFSNDQGVHCSEKDKSLLLQKDKDFPGTLKDLSEFDTPAFCNKDSAKSCDYKSEMLLGLKKHDPN
MQPACQDDSKAGKKLRQKVNRKTEIISKITQIHENDRGSTHDSLNKKLCQKVNISKIISQMNQIYETINE
DGNGFKSSIKDCEDIKSCDFGEINSNKKENYDPIQDPCTLVKKTKRKGSCKAGSSLAGAKNRCGLQLTDS
SQVQSVPLDSGLRHHPNEADSGPGEQTNLPKMQKQSAGRSLGDAFSVSLGKEGSRPAKAVSKMTPKSKKR
KLPLGCSPETHGTVEITPNTDLAKAVDSQQTEKENYLEKEKIAKRKPDFCTKVLKPLSETCSSNIKNSSL
DSMCKSSLPLSISSRKTLMLEESSSLESTCIFQVGDAAHEKITTGTRNPHHRTQKSTPGSRTSLVLVDTS
SVSDTNPANPENESEGQSSHPMRRKRQCVPLNLTEPSLRSKMRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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