NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28869.1 Public Mus musculus 17 Tspo2 23 108 98 CCDS HistoryNCBI Gene:70026Re-query CCDS DB by CCDS ID:28869.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28869.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024794.11 ENSMUSP00000024794.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024794.11Link to Ensembl Protein Viewer:ENSMUSP00000024794.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024794Re-query CCDS DB by Protein ID:ENSMUSP00000024794
Original member Current member NCBI NM_027292.2 NP_081568.1 Accepted alive Link to Nucleotide Sequence:NM_027292.2Link to Protein Sequence:NP_081568.1Re-query CCDS DB by Nucleotide ID:NM_027292Re-query CCDS DB by Protein ID:NP_081568Link to BLAST:NP_081568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081568.1 162 Q9CRZ8 162 100% 0 0

Chromosomal Locations for CCDS 28869.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48448624 48448800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48449020 48449161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48449883 48450052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGCAGCTTCAAGGACCTGTCTTTGTAGGTGTGCCCCTGCTGGGGCCCATCCTGATTTGTATGCTCATTC
ATCAGCCATCCAGTCGGTGTGAGGATGAGAGAAAGTTACCCTGGTGCCCACCTCACAAGGTCATATTGCT
TGTGTGGGTGACCATCTACTCTGTCATGGGCTATGCCTCCTACCTGGTATGGAAGGAACTCGGAGGGGGC
TTCCGGTGGCCCCTAGCACTGCCCCTTGGTCTCTACTCTTTCCAGCTGGCCCTCAGCTGGACTTTCTTGG
TGCTCTTCCTGGCAGCCGACAGCCCTGGGCTGGCCCTCCTGGACCTCTTACTGCTCTATGGACTGGTAGC
AAGCCTGGTGTTTATCTGGCAGCCAATCAACAAGCTGGCTGCTCTGCTCCTCCTGCCCTACCTGGCCTGG
CTCACTGTGACCACCGCCATCACCTACCGCCTGTGGAGGGACAGCTTGTGTCCAACGTACCAGCCTTAG

Translation (162 aa):
MQLQGPVFVGVPLLGPILICMLIHQPSSRCEDERKLPWCPPHKVILLVWVTIYSVMGYASYLVWKELGGG
FRWPLALPLGLYSFQLALSWTFLVLFLAADSPGLALLDLLLLYGLVASLVFIWQPINKLAALLLLPYLAW
LTVTTAITYRLWRDSLCPTYQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH