NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24256.1 Public Mus musculus 10 Sdr9c7 23 108 98 CCDS HistoryNCBI Gene:70061Re-query CCDS DB by CCDS ID:24256.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047134.7 ENSMUSP00000036628.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047134.7Link to Ensembl Protein Viewer:ENSMUSP00000036628.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047134Re-query CCDS DB by Protein ID:ENSMUSP00000036628
Original member Current member NCBI NM_027301.3 NP_081577.1 Accepted alive Link to Nucleotide Sequence:NM_027301.3Link to Protein Sequence:NP_081577.1Re-query CCDS DB by Nucleotide ID:NM_027301Re-query CCDS DB by Protein ID:NP_081577Link to BLAST:NP_081577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081577.1 313 Q8K3P0 313 100% 0 0

Chromosomal Locations for CCDS 24256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127898645 127898945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127902156 127902414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127903578 127903741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127909745 127909962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCGGCCCTCACAGACTTTGCTTTTATGTACCGCTGGTTCAAAAATTGCAATCTGGTTAAAAACCTCT
CTGAGAAGTATGTCTTCATCACTGGCTGTGACTCCGGCTTTGGGAACCTGTTGGCCAAACAACTGGTTGA
TAGGGGCATGAAAGTGCTTGCTGCCTGCCTCACTGAGGAGGGGGCTCAGAAACTCCTGCAGGACACCTCC
CACCAGCTGCAGACCTTCCTCCTAGATGTCACCAAGTCGGAGAACGTCAAGGAAGCAGCCCAGTGGGTGA
GGGACCAAGTGGGCGAGCAAGGCCTCTGGGCCCTGGTGAACAACGCTGGCGTGGGCCTGCCCAGTGGTCC
CAACGAATGGCTGACCATAAAAGACTTTGTGAAAGTGATCAACATAAACCTGGTGGGGCTGATTGATGTC
ACTCTGAACATGCTGCCGATGATCAAGAAAGCCCGGGGCAGGGTGGTCAACATGTCCAGCTCTGGTGGCC
GTGTGGCTATATTCGGCGGTGGTTACTGTGTCTCCAAGTTTGGTGTTGAAGCCTTCTCTGATAGCATCAG
GCGCGAGCTTCATTTCTTCGGGGTGAAGGTCAGCATCATTGAGCCAGGGAACTACAAGACATCCATTCTG
GGCCAAGAAGCTCTGGAATCACGCATGAAGAAGCTGTGGGATCGGCTGCCACAGGAGACCCGGGATAGCT
ACGGAGAGGAGTATTTCCAAACCTATACTAAAAAGTTGGTTAACTTGATGAGGTCAGCAGAGCCAAGAAT
CAGCGATGTCACCAACAGCATGGAGCACGCCATTGTCTCCCGGAGCCCCCGAATCCGCTACAACCCTGGC
CTGGACGTCAAGTTTCTCTATCTCACCCTGGCTAAGCTGCCCACCCCTGTGACAGATTTCATCCTTAGCA
GATACTTGCCAAGACCAGCAGACAGTGTTTGA

Translation (313 aa):
MAALTDFAFMYRWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTS
HQLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVININLVGLIDV
TLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELHFFGVKVSIIEPGNYKTSIL
GQEALESRMKKLWDRLPQETRDSYGEEYFQTYTKKLVNLMRSAEPRISDVTNSMEHAIVSRSPRIRYNPG
LDVKFLYLTLAKLPTPVTDFILSRYLPRPADSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH