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Report for CCDS37079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37079.1 Public Mus musculus 15 Atad2 23 108 98 CCDS HistoryNCBI Gene:70472Re-query CCDS DB by CCDS ID:37079.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038194.4 ENSMUSP00000043691.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038194.4Link to Ensembl Protein Viewer:ENSMUSP00000043691.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038194Re-query CCDS DB by Protein ID:ENSMUSP00000043691
Original member NCBI NM_027435.2 NP_081711.2 Updated not alive Link to Nucleotide Sequence:NM_027435.2Link to Protein Sequence:NP_081711.2Re-query CCDS DB by Nucleotide ID:NM_027435Re-query CCDS DB by Protein ID:NP_081711
Current member NCBI NM_027435.3 NP_081711.2 Accepted alive Link to Nucleotide Sequence:NM_027435.3Link to Protein Sequence:NP_081711.2Re-query CCDS DB by Nucleotide ID:NM_027435Re-query CCDS DB by Protein ID:NP_081711Link to BLAST:NP_081711.2

Chromosomal Locations for CCDS 37079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58095527 58095571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58096577 58096705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58097252 58097385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58098359 58098748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58099711 58099854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58099967 58100089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58102377 58102536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58103198 58103394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58104431 58104566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58105477 58105662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58106725 58106911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58108081 58108195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58108303 58108617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58109948 58110038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58111117 58111276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58114170 58114258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58115672 58115846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58116768 58116883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58117238 58117346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58118345 58118449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58120942 58121059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58122453 58122602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58125742 58125829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58126048 58126150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58126549 58126714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58128209 58128255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58132193 58132341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58134807 58134974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4095 nt):
ATGGTGGTCCTCCGCAGCAGCCTGGAGCTGCACAGTCGCTCCACCACCTCCTCGGCCACCGACTCTCTGG
ACCTGTCCAGTGAGTTCCTCAGCCTGCAGGACAGCGGCGGGAGGCGGCCCAGATTGCGCCGAGCCGGGAG
GAAATCGACGGCGTCCAAGGCGGCGGGCGATGGATTCACAGTTAAGGGAGCTGAAACCTACCACAACACG
CGCTCTTTAAGGTCTCTGAGAAACCAAGCACAAACTTCTTCAGAGTCTAGTTTTGACAAGAACGTGGACA
GAACAGAGAAATACTCCAATGGCAGACATTTCACAAGGCAATTTGCTCGACAGCAGGCTGATAAAAAAGA
AGAGTGCAAAGAAGACAAAGTTATTCCAGTTATTCGCTCATTGAGGAATAGAAACATTGCTCCAACTGCA
GAACATTTGCACGAACAAAGTGGAGATGTTGAAGTTCGAAGAAGTTGCAGGATTAGAAGTCGTTACAGTA
CCATGAACCAGTCTGTGCTATTTGACAAGCTTATAACAAACACTGCTGAAGCTGTACTTCAAAAGATGGA
TGACATGAAAAAGATGCGCAGACAGCGGATGAAGAAGCTTGAAGACTTGGGAGTATTCAATGAAACAGAA
GAGAGTAATCTCACTATGTACACAAGAGGAAAACTAAAGGCTATCCAGCGAGCTGATGAAGAAACAACTG
ATAACCAGGACGGCAGTGTGGAATCATCTGAAGAGGGGGAAGAGCAAGAGGATGATGATGGCGAAGATGA
AGATGATGAAGATGAAGAAGAGGGAGAAGAAGATAATCAAAAAAGATACTATCTTAGGCAGAGAAAAACA
ACGGTTTACTACCAGTCTCCACTGGAAAGTAAACCTCGTCACCAGAGAAAGCCCAACATGTTTTATAGTG
GCCCAGCTTCTCCTGCAAGACCAAGATTCCGCTTGTCTTCTACGGGACCAAGAAGTCCCTATTGTAAACG
AATGAGCAGGCGAAGGCATGCCATCCACAGCAGTGACTCTACTTCCTCCTCCTCCTCTGAAGACGACTGT
TTTGAGAGGAGAACAAAAAGGAACCGAAATAGAGCTATTAACAGGTGCCTCCCACTAAATTTTCGGAAAG
ATGAAATAAGAGGGATTTATAAAGATCGAATGAAAATTGGAGCAAGCCTTGCTGATGTTGACCCAATGCA
ACTAGATACTTCAGTGCGCTTTGACAGTGTTGGCGGCCTGTCCAGTCACATTGCAGCTCTAAAAGAGATG
GTGGTGTTTCCCTTACTTTATCCAGAAGTCTTCGAAAAGTTTAAAATTCAACCCCCAAGAGGTTGTTTGT
TTTATGGACCACCTGGAACTGGAAAAACCCTGGTTGCTAGAGCACTTGCCAATGAGTGCAGCCGAGGGGA
TAAGAGAGTGGCGTTCTTCATGAGGAAAGGTGCTGACTGCCTGAGTAAATGGGTAGGAGAATCTGAGAGA
CAGCTTCGGTTGCTATTTGACCAGGCCTATCAGATGCGCCCAGCAATTATATTCTTTGATGAAATTGATG
GTTTGGCTCCAGTACGATCTAGCAGGCAAGATCAGATTCACAGTTCTATTGTTTCAACCCTGTTAGCTCT
TATGGATGGTTTGGACAGCAGAGGAGAAATTGTGGTCATTGGAGCTACCAACCGGCTAGATTCCATAGAC
CCTGCTTTACGGAGGCCCGGTCGGTTTGACAGAGAATTCCTTTTTAGTCTACCTGATAAAAATGCTCGAA
AAGAGATTCTGAAGATTCATACAAGAGATTGGAATCCAAAGCCAGTGGACATGTTTCTAGAAGAACTAGC
AGAACACTGTGTTGGCTACTGTGGTGCGGATATTAAGTCAATCTGTGCTGAAGCTGCTTTGTGCGCCCTG
CGTCGACGGTACCCGCAGATCTACACCACCAGCGAGAAGCTTCAGCTGGATCTCTCTTCAATTACCATCT
CAGCTAAGGATTTTGAGGCAGCTCTGCAGAAAATAAGACCAGCTTCCCAGAGAGCTGTGACATCACCCGG
ACAGGCACTGTCTGCCATTGTGAAACCACTTCTGCAAAATACTGTTCATAGGATCTTAGACGCCCTACAG
AAAGTATTTCCACATGTGGAAGTTGGAACAAACAAATCTTTAAATTCAGATGTTTCTTGCCCTTTTCTAG
AAAGTGATTTGGCATACAGTGATGATGATACACCATCTGTGTATGAAAATGGACTTTCTCAAAAAGAAAA
TTTAAATTTTCTTCATTTAAATAGAAATGCCTGTTACCAGCCTATGTCTTTTCGACCAAGACTATTGATA
GTGGGAGAACCAGGATTTGGACAGAGTTCTCACTTGGCACCAGCTGTCATCCATGCTTTGGAAAAATTTA
CTGTATATACATTAGACATTCCTGTTCTTTTTGGCATCAGTACAACATCTCCTGAAGAGGCATGTTCCCA
AATGATTCGTGAAGCTAAGAGAACAGCACCCAGCATAGTCTATGTCCCACATATCCATTTGTGGTGGGAA
ATAGTTGGACCGACACTCAAAGCCACATTTACAACATTATTACAGACTATACCTTCATTTGCTCCAGTTT
TATTACTTGCAACTTCTGAGAAACCATACTCAGCTTTGCCGGAAGAGGTACAAGAATTGTTTACCCATGA
TTATGGAGAAATTTTTAATGTACAGTTACCAGATAAAGAAGAACGAACCAAATTTTTTGAAGACTTAATT
TTAAAACAAGCTTCAAAGCCTCCTGTGTCACAAAAGAAAGCAGTTCTGCAGGCCTTGGAGGTGCTCCCAG
TCGCACCACCGCCTGAACCAAGACCACTGACAGCAGAGGAAGTTAAACGGCTTGAAGAACAAGAAGAAGA
TACATTCAGAGAACTCAGGATTTTCTTAAGAAATGTCACACATAGACTTGCTATTGATAAGCGATTCCGA
GTCTTTACTAAGCCTGTTGACCCTGATGAGGTTCCTGATTATGTCACTGTCATAAAGCAACCAATGGACC
TTTCATCTGTAATCAGTAAAATTGATTTACATAAATATCTCACTGTGAAAGACTATTTGAAGGATATTGA
TCTAATCTGTAGTAATGCTTTAGAATACAATCCAGATAGAGATCCTGGAGATCGTCTTATTAGGCATAGA
GCTTGTGCTTTGAGAGACACTGCTTATGCAATAATTAAAGAGGAGCTTGATGAAGACTTTGAGCAGCTCT
GTGAAGAAATTCAGGAATCTCGGAAGAAGAGAGGTTGTAGCTCCTCCAAATACGCACCATCTTATTACCA
CGTCATGCCAAAGCAAAATTCTCCTCCTGTTGGTGATAAAAAGCCAGATCAAGAGCAGAATGAGAAGCTA
AAGGTACCGTGCACTCCTGTGGCGTGCAGCACACCTGCTCAGTTGAAAAGAAAATTCCATAAAAAGTCAA
AGTGGCATGTAGGCACCAAAATAAAGCGAAGGAAAATTTCACAAGCTAAAGACAACAGCTTGAATGCTAT
GAACAGTTCAAGCAGGAGCGACACAGAAGACAGCCAGCACACACATGCAGAGCACACGGAGCCTGGAAAC
ACGGACGAGTCCTCGGTAGAAGAAAGTGACAAGCAAAATAGACTTGAAAGCAACATAGACTTGAAAAATA
ACTCAAGTTCCTCTAATATTGAGAATGAACTTGAAGAGCCTAAGGAAACTACGGAGGGCACAGAACTGAG
AAAAGACAGGATTGTTTGCAGGGGTGATGCCTCTGCCTCCCAGGTCACAGACATTCCCGAAGACAGTGAA
TCAAAAGAAATGGATTTTCTGCGGATGACTCTAGCTAGAGGTTCCCAGGTAGAGCAGCAGGAGCTCATCA
GTATGGAGCAGGCTCTGGCCATCCTCTCTCAGCCGACACCCTCACTTGTGCTGGACCACAAGCAGTTAAC
AAATATTTTGAAGACGGTTGTTAAAAAAAGTCAGAAATATAATATATTCCAACTGGAGAATTTGTATGCA
GTAATCAGCCAGTGTATTTATGAGCACCGCAGGGACTATGACAAAACAGCGCTTGTTCAGAAAATGGAGC
AAGCAGTAGAAAACTTCAATTGTTCCAGATCATAG

Translation (1364 aa):
MVVLRSSLELHSRSTTSSATDSLDLSSEFLSLQDSGGRRPRLRRAGRKSTASKAAGDGFTVKGAETYHNT
RSLRSLRNQAQTSSESSFDKNVDRTEKYSNGRHFTRQFARQQADKKEECKEDKVIPVIRSLRNRNIAPTA
EHLHEQSGDVEVRRSCRIRSRYSTMNQSVLFDKLITNTAEAVLQKMDDMKKMRRQRMKKLEDLGVFNETE
ESNLTMYTRGKLKAIQRADEETTDNQDGSVESSEEGEEQEDDDGEDEDDEDEEEGEEDNQKRYYLRQRKT
TVYYQSPLESKPRHQRKPNMFYSGPASPARPRFRLSSTGPRSPYCKRMSRRRHAIHSSDSTSSSSSEDDC
FERRTKRNRNRAINRCLPLNFRKDEIRGIYKDRMKIGASLADVDPMQLDTSVRFDSVGGLSSHIAALKEM
VVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESER
QLRLLFDQAYQMRPAIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSID
PALRRPGRFDREFLFSLPDKNARKEILKIHTRDWNPKPVDMFLEELAEHCVGYCGADIKSICAEAALCAL
RRRYPQIYTTSEKLQLDLSSITISAKDFEAALQKIRPASQRAVTSPGQALSAIVKPLLQNTVHRILDALQ
KVFPHVEVGTNKSLNSDVSCPFLESDLAYSDDDTPSVYENGLSQKENLNFLHLNRNACYQPMSFRPRLLI
VGEPGFGQSSHLAPAVIHALEKFTVYTLDIPVLFGISTTSPEEACSQMIREAKRTAPSIVYVPHIHLWWE
IVGPTLKATFTTLLQTIPSFAPVLLLATSEKPYSALPEEVQELFTHDYGEIFNVQLPDKEERTKFFEDLI
LKQASKPPVSQKKAVLQALEVLPVAPPPEPRPLTAEEVKRLEEQEEDTFRELRIFLRNVTHRLAIDKRFR
VFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLKDIDLICSNALEYNPDRDPGDRLIRHR
ACALRDTAYAIIKEELDEDFEQLCEEIQESRKKRGCSSSKYAPSYYHVMPKQNSPPVGDKKPDQEQNEKL
KVPCTPVACSTPAQLKRKFHKKSKWHVGTKIKRRKISQAKDNSLNAMNSSSRSDTEDSQHTHAEHTEPGN
TDESSVEESDKQNRLESNIDLKNNSSSSNIENELEEPKETTEGTELRKDRIVCRGDASASQVTDIPEDSE
SKEMDFLRMTLARGSQVEQQELISMEQALAILSQPTPSLVLDHKQLTNILKTVVKKSQKYNIFQLENLYA
VISQCIYEHRRDYDKTALVQKMEQAVENFNCSRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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