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Report for CCDS35738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35738.1 Public Mus musculus 1 Apobec4 23 108 98 CCDS HistoryNCBI Gene:71281Re-query CCDS DB by CCDS ID:35738.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068875.4 ENSMUSP00000069723.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068875.4Link to Ensembl Protein Viewer:ENSMUSP00000069723.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068875Re-query CCDS DB by Protein ID:ENSMUSP00000069723
Original member Current member NCBI NM_001081197.1 NP_001074666.1 Accepted alive Link to Nucleotide Sequence:NM_001081197.1Link to Protein Sequence:NP_001074666.1Re-query CCDS DB by Nucleotide ID:NM_001081197Re-query CCDS DB by Protein ID:NP_001074666Link to BLAST:NP_001074666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074666.1 374 Q497M3 374 100% 0 0

Chromosomal Locations for CCDS 35738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152756223 152757347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGAGCCCCTGTATGAGGAGATTCTAACCCAAGGTGGAACAATAGTCAAACCTTACTACTGGCTCAGCC
TT
TCTCTAGGTTGCACCAACTGCCCTTACCACATTCGGACAGGCGAGGAAGCGAGAGTTCCCTACACAGA
A
TTTCATCAGACTTTTGGATTCCCATGGTCAACGTACCCTCAAACAAAACACCTCACATTTTATGAGCTG
AGA
AGTTCCTCCAAGAACCTGATACAAAAGGGCCTTGCTAGCAACTGCACCGGGAGTCACAACCACCCAG
AA
GCAATGCTATTTGAGAAGAACGGTTACCTTGATGCAGTCATATTCCATAACAGCAACATCAGACATAT
C
ATTCTGTATTCCAACAACTCCCCTTGTAACGAGGCTAAGCACTGCTGCATCAGCAAAATGTACAACTTC
CTG
ATGAACTATCCGGAAGTCACCCTTAGTGTTTTCTTTTCTCAGCTCTACCATACTGAAAAACAGTTTC
CT
ACCTCAGCATGGAACCGTAAGGCTCTCCAGAGCCTGGCCAGCTTATGGCCCCAGGTCACTTTGAGTCC
A
ATATGTGGTGGCCTTTGGCATGCTATTCTTGAAAAGTTTGTTAGCAACATCTCTGGATCAACTGTTCCT
CAG
CCCTTTATAGCTGGGAGAATCCTGGCTGACAGGTATAACACTTATGAAATCAACTCCATCATAGCAG
CA
AAGCCTTACTTCACTGATGGTCTTCTGAGCCGACAAAAAGAGAATCAGAACCGAGAAGCCTGGGCAGC
T
TTTGAAAAGCACCCCTTAGGCAGTGCTGCTCCTGCCCAGAGGCAGCCCACAAGGGGTCAGGACCCCAGG
ACT
CCTGCCGTCCTCATGCTGGTGTCTAACAGAGATCTACCGCCAATTCATGTGGGTTCAACCCCACAAA
AA
CCCAGGACCGTGGTAAGGCACTTGAATATGCTTCAACTGTCATCCTTCAAAGTCAAAGATGTAAAGAA
A
CCTCCCTCGGGCAGGCCAGTGGAGGAGGTGGAAGTCATGAAGGAGTCTGCAAGGAGCCAAAAGGCAAAC
AAA
AAGAACAGAAGCCAATGGAAGAAACAGACTCTAGTTATCAAGCCAAGAATTTGCCGTTTACTGGAGA
GG
TAA


Translation (374 aa):
MEPLYEEILTQGGTIVKPYYWLSLSLGCTNCPYHIRTGEEARVPYTEFHQTFGFPWSTYPQTKHLTFYEL
R
SSSKNLIQKGLASNCTGSHNHPEAMLFEKNGYLDAVIFHNSNIRHIILYSNNSPCNEAKHCCISKMYNF
L
MNYPEVTLSVFFSQLYHTEKQFPTSAWNRKALQSLASLWPQVTLSPICGGLWHAILEKFVSNISGSTVP
Q
PFIAGRILADRYNTYEINSIIAAKPYFTDGLLSRQKENQNREAWAAFEKHPLGSAAPAQRQPTRGQDPR
T
PAVLMLVSNRDLPPIHVGSTPQKPRTVVRHLNMLQLSSFKVKDVKKPPSGRPVEEVEVMKESARSQKAN
K
KNRSQWKKQTLVIKPRICRLLER




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser