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Report for CCDS27743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27743.1 Public Mus musculus 15 Ppp6r2 23 108 98 CCDS HistoryNCBI Gene:71474Re-query CCDS DB by CCDS ID:27743.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088788.3 ENSMUSP00000086167.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088788.3Link to Ensembl Protein Viewer:ENSMUSP00000086167.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088788Re-query CCDS DB by Protein ID:ENSMUSP00000086167
Original member Current member EBI ENSMUST00000228284.1 ENSMUSP00000154087.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228284.1Link to Ensembl Protein Viewer:ENSMUSP00000154087.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228284Re-query CCDS DB by Protein ID:ENSMUSP00000154087
Original member Current member NCBI NM_001356969.1 NP_001343898.1 Accepted alive Link to Nucleotide Sequence:NM_001356969.1Link to Protein Sequence:NP_001343898.1Re-query CCDS DB by Nucleotide ID:NM_001356969Re-query CCDS DB by Protein ID:NP_001343898Link to BLAST:NP_001343898.1
Original member Current member NCBI NM_026813.2 NP_081089.1 Accepted alive Link to Nucleotide Sequence:NM_026813.2Link to Protein Sequence:NP_081089.1Re-query CCDS DB by Nucleotide ID:NM_026813Re-query CCDS DB by Protein ID:NP_081089Link to BLAST:NP_081089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343898.1 923 Q8R3Q2 923 99.8917% 0 1
NP_081089.1 923 Q8R3Q2 923 99.8917% 0 1

Chromosomal Locations for CCDS 27743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89253035 89253261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89256663 89256849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89259066 89259203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89262353 89262418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89265129 89265241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89265605 89265718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89268503 89268629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89269810 89269962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89273970 89274185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89275453 89275517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89277255 89277370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89278699 89278784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89279720 89279817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89280007 89280064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89280359 89280483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89280755 89280918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89281848 89282004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89282091 89282179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89282883 89283078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89285779 89286006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89286098 89286146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2772 nt):
ATGTTCTGGAAATTTGACTTGAACACCACGTCCCACGTTGACAAGCTCCTGGACAAGGAACATGTGACCC
TGCAGGAGCTGATGGATGAAGATGACATCTTGCAGGAGTGTAAGGCCCAGAACCAGAAGCTGCTGGACTT
CCTGTGCAGGCAGCAGTGCATGGAGGAGCTGGTGAACCTCATCACACAGGACCCACCCCAGGACATGGAA
GAGAAGGTCCGATTCAAATACCCAAACACAGCCTGTGAGCTTCTGACTTGTGATGTGCCACAGATCAGCG
ACAGACTAGGCGAGGACGAGAGTCTGCTGAACCTTCTCTATGACTTCCTGGACCAGGAGCCGCCACTCAA
CCCTCTGCTTGCCAGTTTTTTCAGCAAGACCATTGGCAATCTTATTGCAAGGAAAACTGAACAGGTGATC
ATGTTCCTGAAGAAGAAGGAGAAATTCATCAGCCAGCTCCTGAAGCACATAGGCACCTCAGCTCTCATGG
ACCTGCTGCTGCGCCTGGTCAGCTGTGTGGAGCCAGTTGGTCTCCGGCAGGAGGTCCTACATTGGCTGAA
TGAAGAGAAAATCATCCAGAGAATTGTGGCATTGATCCATCCCCACCAGGATGAAGATAGGCAGTCAAAT
GCTTCTCAGGCACTCTGTGACATCATCAGGCTGGGCAGAGACCAGGGCAGTCAGCTGCAGGAGACTGTGG
AGCCAGACCCCCTCCTCATAACATTGGAGTCGCAGGACTGTGTGGAGCAGCTTCTGAAGAACATGTTTGA
TGGGGATCAGACGGAGAGCTGCCTGGTCAGTGGGATGCAGGTGCTGCTTGCCTTGCTGGAGCCAAGGCGT
GTTGGAACAGAAGGCTTGGTGGACTCCTTTTCTCAGGGACTGGAAAGGTCACACTCCGTCAGCAGCAGCA
TCCTTCGTGGCATCGAGCCATGGCTGAAGAATTTCCATCAGCTCCTCCTCAACCCACCAAAGAAAAAAGC
AATCCTGACCACTATTGGTGTGTTAGAGGAGCCCCTGGGGAATGCTCGTCTTCATGGTGCACGCCTCATG
GCTGCACTGCTGCACACAAACACACCTGGCATCAACCAGGAGCTCTGCCGGCTCAACACCATGGACTTAC
TGCTGGACTTGTTCTTTAAGTACACCTGGAATAACTTTTTGCACCTCCAAGTGGAACTATGCATAGCCGC
TATTCTTTCCCACGCTGCTCGGGAGGAGCAGGCAGAAGCCAGTGGATCCGATGGCAAGGTGGAGCCTCTG
CAGGGCAGTGGAGATGGGAATGGGAAGCTGGAGACCACCCCATCCATCACCAGCCCTCCTGAGAACACAA
TGGTGACCCATCTGTTCCAGAAGTGCTGCCTGGTACAGAGGATCCTGGAAGCCTGGGAAGCCAATGACCA
CACACAGGCAGCAGGTGGTATGAGACGTGGGAATATGGGCCACCTCACAAGGATCGCCAATGCAGTTGTA
CAGAACCTGGAGCAGGGCCCGGTGCAGGCCCACATCAGTGAAGTCATCCGAGGGCTCCCTGCAGATTGCC
GTGGACGCTGGGAGAGCTTTGTGGAAGAGACATTGATGGAGACCAACCGCAGGAACACTGTGGACCTGGC
CTTCTCTGAGTACCAGATCCAGCAGATGACAGCAAACTTTGTGGATCAGTTTGGCTTCAATGATGAGGAG
TTTGCAGACCAGGATGACAACATCAACGCCCCATTTGACCGGATTGCAGAGATCAACTTCAACATTGAAG
CCGATGAGGACAGTCCCAGTGCAGCTCTGTTTGAAGCCTGTTGCAGTGATCGGATCCAGCCCTTTGATGA
TGATGAAGAGGAGGACATTTGGGAAGATGACGAGACTCGATGCGCTGCCCGGGTGATGGCCAGAGCCAGG
TTTGGAGCCCCTCATGTCTCAGATAATTACTCAAAGAATGCTTTGGAACATGGAGGCCAGGACAGGAAGA
CTGGCTCAGCAGTAGCTAGGAATGTGCCTGGATTGGCCGCTCCTTCATCTCCTACACAGAAAGAAGGTCC
TCGCTCAGAGAGTGATTCAGCAGGTACTACATGGACAGCAGTTTTTGATGAGCCAGTGAACCCGCTGTCT
GCAACCCCAGGAGCTGCGAGGGATGTGGGTTCTAGTGCATGGGCGGCTGGTCCTTCAGTTGTAGAGGAGA
AAGGCTGGGCCAAATTCACCGACTTCCAGCCTTTCTGCTGCTCTGAGACAGGGCCCCGGTGCAGCTCTCC
TGTGGACATGGACCACAGCAATGCCGAGGGTGGCCAGAGTCCAGGCCCAGAGAAAACCTTTGGTCCTACC
TCGCCTTGTGCCTGGAATGTGTGTGTCACTAGGAAGGCCCCCCTGGTAGCCTCTGACAGCAGCTCCTCTG
GGGGATCTGACAGTGAAGATGACGAGAAGGCAGCGGGTGCTGTGGAAGCTGTGTGCACAGGCCATACTGG
AAAGGTCTCCCCACCACCCAGGACAGCGGAGGCTGCTGTTGGCAGGGCTGAGTGTCCTGACAGTACCGTG
TTAGCCCCTGCCTGCCCCGCACCTTCAGAAGTGACCATCAGTCCTGCCGTGGCTACCATAGCACCAAGCA
AGGCAGGCTCTCCCACGGCCACCATAGTGGTCTCTTCCTCAGTGGCTGCTGCAGTGCCCCCAGGACCGAT
CGTGGCAGTAACCACAGCAGCCCCAGCCATAGTTGCCACCCTGGGGACGATGACAAAGGACAGGAAGGCA
GATGCCCTGCCAGAAGGCGCTGCCTTAAATGGTCCTGTGTAA

Translation (923 aa):
MFWKFDLNTTSHVDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVNLITQDPPQDME
EKVRFKYPNTACELLTCDVPQISDRLGEDESLLNLLYDFLDQEPPLNPLLASFFSKTIGNLIARKTEQVI
MFLKKKEKFISQLLKHIGTSALMDLLLRLVSCVEPVGLRQEVLHWLNEEKIIQRIVALIHPHQDEDRQSN
ASQALCDIIRLGRDQGSQLQETVEPDPLLITLESQDCVEQLLKNMFDGDQTESCLVSGMQVLLALLEPRR
VGTEGLVDSFSQGLERSHSVSSSILRGIEPWLKNFHQLLLNPPKKKAILTTIGVLEEPLGNARLHGARLM
AALLHTNTPGINQELCRLNTMDLLLDLFFKYTWNNFLHLQVELCIAAILSHAAREEQAEASGSDGKVEPL
QGSGDGNGKLETTPSITSPPENTMVTHLFQKCCLVQRILEAWEANDHTQAAGGMRRGNMGHLTRIANAVV
QNLEQGPVQAHISEVIRGLPADCRGRWESFVEETLMETNRRNTVDLAFSEYQIQQMTANFVDQFGFNDEE
FADQDDNINAPFDRIAEINFNIEADEDSPSAALFEACCSDRIQPFDDDEEEDIWEDDETRCAARVMARAR
FGAPHVSDNYSKNALEHGGQDRKTGSAVARNVPGLAAPSSPTQKEGPRSESDSAGTTWTAVFDEPVNPLS
ATPGAARDVGSSAWAAGPSVVEEKGWAKFTDFQPFCCSETGPRCSSPVDMDHSNAEGGQSPGPEKTFGPT
SPCAWNVCVTRKAPLVASDSSSSGGSDSEDDEKAAGAVEAVCTGHTGKVSPPPRTAEAAVGRAECPDSTV
LAPACPAPSEVTISPAVATIAPSKAGSPTATIVVSSSVAAAVPPGPIVAVTTAAPAIVATLGTMTKDRKA
DALPEGAALNGPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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