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Report for CCDS25633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25633.1 Public Mus musculus 11 Atp5pd 23 108 98 CCDS HistoryNCBI Gene:71679Re-query CCDS DB by CCDS ID:25633.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25633.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043931.8 ENSMUSP00000046256.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043931.8Link to Ensembl Protein Viewer:ENSMUSP00000046256.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000043931Re-query CCDS DB by Protein ID:ENSMUSP00000046256
Original member Current member EBI ENSMUST00000073791.9 ENSMUSP00000086072.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073791.9Link to Ensembl Protein Viewer:ENSMUSP00000086072.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073791Re-query CCDS DB by Protein ID:ENSMUSP00000086072
Original member Current member EBI ENSMUST00000106537.7 ENSMUSP00000102147.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106537.7Link to Ensembl Protein Viewer:ENSMUSP00000102147.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106537Re-query CCDS DB by Protein ID:ENSMUSP00000102147
Original member Current member EBI ENSMUST00000180072.7 ENSMUSP00000137071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180072.7Link to Ensembl Protein Viewer:ENSMUSP00000137071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180072Re-query CCDS DB by Protein ID:ENSMUSP00000137071
Original member NCBI NM_027862.1 NP_082138.1 Updated not alive Link to Nucleotide Sequence:NM_027862.1Link to Protein Sequence:NP_082138.1Re-query CCDS DB by Nucleotide ID:NM_027862Re-query CCDS DB by Protein ID:NP_082138
Current member NCBI NM_027862.2 NP_082138.1 Accepted alive Link to Nucleotide Sequence:NM_027862.2Link to Protein Sequence:NP_082138.1Re-query CCDS DB by Nucleotide ID:NM_027862Re-query CCDS DB by Protein ID:NP_082138Link to BLAST:NP_082138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082138.1 161 Q9DCX2 161 100% 0 0

Chromosomal Locations for CCDS 25633.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115415748 115415879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115416015 115416077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115416853 115416924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115417839 115417935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115418386 115418507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGCTGGGCGTAAACTTGCTCTAAAAACCATTGATTGGGTATCTTTTGTGGAGGTCATGCCCCAAAACC
AGAAGGCAATTGGAAATGCCCTGAAGTCCTGGAATGAGACCTTCCACGCCAGGTTGGCTAGTCTGTCTGA
GAAACCACCTGCGATTGACTGGGCTTACTACAGGGCCAATGTGGCCAAGCCTGGCTTGGTGGATGATTTT
GAAAAGAAGTATAATGCCCTGAAGATTCCTGTGCCTGAGGATAAATACACAGCCCTGGTGGACCAGGAGG
AGAAGGAGGATGTGAAGAGCTGTGCTGAGTTTGTGTCTGGATCCCAGCTCAGGATCCAGGAGTATGAGAA
GCAGCTGGAGAAAATGAGGAACATAATTCCCTTTGACCAGATGACCATTGATGACTTGAATGAGATCTTC
CCAGAAACCAAGCTGGACAAAAAGAAGTACCCGTACTGGCCCCACCAGCCCATCGAGAACCTGTGA

Translation (161 aa):
MAGRKLALKTIDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVDDF
EKKYNALKIPVPEDKYTALVDQEEKEDVKSCAEFVSGSQLRIQEYEKQLEKMRNIIPFDQMTIDDLNEIF
PETKLDKKKYPYWPHQPIENL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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