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Report for CCDS29707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29707.1 Public Mus musculus 19 Mamdc2 23 108 98 CCDS HistoryNCBI Gene:71738Re-query CCDS DB by CCDS ID:29707.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29707.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036069.7 ENSMUSP00000045432.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036069.7Link to Ensembl Protein Viewer:ENSMUSP00000045432.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036069Re-query CCDS DB by Protein ID:ENSMUSP00000045432
Original member Current member NCBI NM_174857.3 NP_777282.1 Accepted alive Link to Nucleotide Sequence:NM_174857.3Link to Protein Sequence:NP_777282.1Re-query CCDS DB by Nucleotide ID:NM_174857Re-query CCDS DB by Protein ID:NP_777282Link to BLAST:NP_777282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777282.1 686 Q8CG85 686 99.5627% 0 3

Chromosomal Locations for CCDS 29707.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 23303622 23303686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23303812 23303896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23310762 23311021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23330886 23331038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23333991 23334084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23350599 23350864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23353304 23353447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23359150 23359243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23363710 23363966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23373918 23374055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23377266 23377350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23378663 23378934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23447580 23447693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23448025 23448058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGCTACTAGAAGGGGTCCTGCTGGTAGTGCAAGCCTTGCAGCTTGCCAATGCCCTAGACCTGCCCGCTG
GCTCCTGCGCCTTTGAAGAAGACACGTGTGGCTTTGACTCCGTGTTTGCGTTTCTGCCTTGGATACTAAA
TGAGGAAGGCCATTATGTCTATATGGACACCTCTTTTGCCAGGCAAGGGGAGAAAGCTGTGCTGCTGAGT
TCTGATTTGCAGGCTGAGGAGTGGAACTGTTTGCGCCTGGTCTACCAGATAACCACACCTCCGGGATCTG
TGTCAGACCCCAGCCAGCTGAACCTCTATGTGAGATTTGAGGATGAGAGCTTCGATCGCTTGCTTTGGTC
CACTAAGGAGCCTTCAGACAGCTGGCTCATAGCCAGCCTGGATCTTCAAAACAGCTCCAAGAAATTCAAG
ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAG
CCGGCTACTGTATTGAATGTGACTTTGAAGAAAACCATCTCTGTGGCTTTGTGAACCGCTGGAATCCCAA
TGTGAACTGGTTCGTGGGAGGAGGAACTGCGAAGAACACCCACTCCATCCTCCCACAGGATCACACCTTC
AGGAGTGAGCACGGCCACTACATGTATGTGGACTCTGTGTATGTCAAGCACTTCCAGGAAGTAGCCCAGC
TCATCTCCCCAGTGACCACAGCCTCCATGTCTGGCTGTCTCTCGTTCTATTACCAGCTTCAGCAGGGGAA
TGACAATGTCTTCTCTGTTTACACACGGGACATGGCTGGCCTGTACGAGGAGATTTGGAAAGTGGACAGC
CCAGGCAATGCAGCCTGGAACCTTGCGGAGGTGGAATTTAGTGCTCCTTACCCCATGGAGGTTATTTTTG
AAGTTGCTTTCAATGGTCCCAAAGGAGGCTACGTTGCCCTGGATGATATTTCTTTCTCTCCTGTTCACTG
CCAAAATCAGACAGGGCTTCCTTTCAGTGCTGTGGAAACCAGCTGCGATTTTGAGATAGGCCTCTGCAAC
TTTTATCAAGACAAAGAGGGTCCGGGTTGGACCAGAGTAAGAGTAAAAGCAAACATGTATCGGGCCGGAG
ACCACACGACAGGAACAGGGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGG
AAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGG
TTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAAAACCATGTGGTTCAAGAGAAGATCT
GGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCAC
AAAGGTGGTTTTTATGAGCCTGTGCAAAAGCTTTTGGGACTGTGGCCTGGTAGCCCTGGATGACATTACC
ATACAACTAGGAAACTGCCGGTCTCCAGCAAGACTTCCACCTCCACCTGGAGAATGCACTTTTGATCAAG
ATGAATGTGCGTTTACACAGGAGAAAAGGAACCGAAGCAGCTGGCACAGGGGAAGGGGAGAAACGCCCAC
CTCCTACACAGGACCCAAGGGAGATCACACTACTGGGGTAGGTTACTACATGTACATCGAAGCCTCCCAC
ATGGTGTATGGACAGAAAGCACACCTTTTGTCCCAGCCTCTGAGAGGCGTCCCTGGGAAACACTGCTTGA
CGTTTTTCTACCACATGTACGGAGCAGGGACTGGCCTGCTGAGTGTTTATTTGAAAAGGGAAGAAGATAG
TGAGGAGTCCCTGTTGTGGAGAAGAAGGGGAGAGCAGAGCATCTCCTGGCTGCGGGCACTGGTTGAATAC
AGCTGCAGGAGGAGACACCAGATAATTTTTGAAGCCACTCGAGGAGTGTCCATAAGAAGTGATATCGCCA
TTGATGATGTTAAACTTCAGGCAGGGCCGTGTGCAGGAATGGAAGATACAACTGAACAGTCATCAGGATA
TTCTGAAGACTTAAATGAAATCGAGTATTAA

Translation (686 aa):
MLLEGVLLVVQALQLANALDLPAGSCAFEEDTCGFDSVFAFLPWILNEEGHYVYMDTSFARQGEKAVLLS
SDLQAEEWNCLRLVYQITTPPGSVSDPSQLNLYVRFEDESFDRLLWSTKEPSDSWLIASLDLQNSSKKFK
ILIEGVLGQGNTASIALFEIKMTAGYCIECDFEENHLCGFVNRWNPNVNWFVGGGTAKNTHSILPQDHTF
RSEHGHYMYVDSVYVKHFQEVAQLISPVTTASMSGCLSFYYQLQQGNDNVFSVYTRDMAGLYEEIWKVDS
PGNAAWNLAEVEFSAPYPMEVIFEVAFNGPKGGYVALDDISFSPVHCQNQTGLPFSAVETSCDFEIGLCN
FYQDKEGPGWTRVRVKANMYRAGDHTTGTGHYLLANTKFTSQPGYIGRLYGPSLPGNMQYCVRFHYAIFG
FLKMSDTLAVYIFEENHVVQEKIWSVLESPRGVWMQAEISFKKPMPTKVVFMSLCKSFWDCGLVALDDIT
IQLGNCRSPARLPPPPGECTFDQDECAFTQEKRNRSSWHRGRGETPTSYTGPKGDHTTGVGYYMYIEASH
MVYGQKAHLLSQPLRGVPGKHCLTFFYHMYGAGTGLLSVYLKREEDSEESLLWRRRGEQSISWLRALVEY
SCRRRHQIIFEATRGVSIRSDIAIDDVKLQAGPCAGMEDTTEQSSGYSEDLNEIEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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