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Report for CCDS16025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16025.1 Reviewed, update pending Mus musculus 2 Lypd6b 23 108 98 CCDS HistoryNCBI Gene:71897Re-query CCDS DB by CCDS ID:16025.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 16025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028103.12 ENSMUSP00000028103.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028103.12Link to Ensembl Protein Viewer:ENSMUSP00000028103.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028103Re-query CCDS DB by Protein ID:ENSMUSP00000028103
Original member NCBI NM_027990.3 NP_082266.1 Updated not alive Link to Nucleotide Sequence:NM_027990.3Link to Protein Sequence:NP_082266.1Re-query CCDS DB by Nucleotide ID:NM_027990Re-query CCDS DB by Protein ID:NP_082266
Current member NCBI NM_027990.4 NP_082266.2 Pending alive Link to Nucleotide Sequence:NM_027990.4Link to Protein Sequence:NP_082266.2Re-query CCDS DB by Nucleotide ID:NM_027990Re-query CCDS DB by Protein ID:NP_082266Link to BLAST:NP_082266.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082266.2 172 Q9D7F2-2 172 100% 0 0

Chromosomal Locations for CCDS 16025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 49934808 49934827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49942445 49942596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49943522 49943620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49946080 49946210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 49947420 49947593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGTGCTCTAGTTTTCAGAGACACACGACTTTGACCTGCCCAATCAGGGTGGACAGAATGCTGCTCCTCT
GCCACATTCTAGCTGTCACCATCCTTCAGATCTTGATCATCTCAGAGAACTGGGTGTTTGCAAAGAACAT
CAACTTCTACAATGTGAGGCCCCCTCTTGATCCCACACCATTCCCAAACAGTTTCAAGTGTTTTACTTGC
GAAAATGCAGGGGATAATTATAACTGCAATCGATGGGCAGAAGACAAGTGGTGTCCGCAGGACACACAGT
ATTGTTTGACAGTTCATCACTTCACCAGCCACGGAAGAAGTACGTCCATCACGAAGAAGTGTGCCTCTAA
AAATGAATGTCATTTTGTCGGCTGCCGACACAGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGCTGT
GAAGGAATGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAATGCACGCTC
AGAGGACGTCTGGCAGCAGTGTCTCCAGTGTCCCCAGTCCTTACCTCCTGGTGCTGGCCTGGCTCTTCAT
GCTTCCCTTGCTATGA

Translation (191 aa):
MCSSFQRHTTLTCPIRVDRMLLLCHILAVTILQILIISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTC
ENAGDNYNCNRWAEDKWCPQDTQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCC
EGMICNVELPTNHTNAVFAVMHAQRTSGSSVSSVPSPYLLVLAWLFMLPLL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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