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Report for CCDS28479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28479.1 Public Mus musculus 17 Tedc2 23 108 98 CCDS HistoryNCBI Gene:72016Re-query CCDS DB by CCDS ID:28479.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024930.7 ENSMUSP00000024930.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024930.7Link to Ensembl Protein Viewer:ENSMUSP00000024930.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024930Re-query CCDS DB by Protein ID:ENSMUSP00000024930
Original member Current member NCBI NM_028056.2 NP_082332.1 Accepted alive Link to Nucleotide Sequence:NM_028056.2Link to Protein Sequence:NP_082332.1Re-query CCDS DB by Nucleotide ID:NM_028056Re-query CCDS DB by Protein ID:NP_082332Link to BLAST:NP_082332.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082332.1 436 Q6GQV0-1 436 100% 0 0

Chromosomal Locations for CCDS 28479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24215859 24216005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24216250 24216440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24217681 24217782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24217889 24218000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24218170 24218263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24219153 24219206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24219731 24220133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24220252 24220310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24220517 24220615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24220691 24220740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGCTTGGTGTTAAAGGAAACTACCTACTACCCGCAGACTGCGCTCACCGGCTGGTAGCGGAGCTGCAGG
GCGCCTTGGACTCCTGCGCCGATCGGCAGCGGCAGTTGGAGCGGAGCCTGCGCGTTTCCAGGAGGCTGCT
GCAGGTCTGGGAACCAGCCAGGACCCCATCTCCAGTTCCAGAAACCAAAGAAGAGGACCCAAGTCCAGCA
TGTGCACCGAGTTCTCAAGATCTCGAGGAGCTGGAACTTTTGACCCAGGCTCTGGAGAAGGCTGTACGTG
TGAGGAAAGGCGTGTCCAATGCTGGACAAAGAGACAGAACCCCCACTCTGACATCTAAGGCAGCCACTTC
TGGTGCCGCTGCCGCCTCCCATCCTCGGGCTCCCAGCCGGGGTGGCAGCCGTGTATTGGGTACAAGATCC
ACCAAGGGTATACAGCGGGCCACAGCCCCTCCCAAGGATTACCCTGAGCACAGACTACGATCAAAGGGTG
ATAAGACCCATGTAAGAACACAAGACCAAACTACTGGGTATGGACCAGACCTCAGGGACCAACAAATGAC
CCCGTCATCTGCTCATCACACCACAGAACTCTTCGCATTAAAGGAGAAGGGGACTCTCCTGCAGCTACCT
GAGGACTTCAGGAAGGCAGTGTCTCGGAATTCCTGCCTGTGGGCCCAGCTCAACTCTGCACGAACCAACG
ACTCCACAGATGCCACTAGAGCCGCCAAAACTCAGTTCCTCCACAAACTCCAGATGGCTTCAGGCTGTTC
CAGCCACAGGCCCAGTGCTACAGAGGTGGAGGCGCACGCACGGATCCTGAGGAAGGCCTGTATGCTGCTG
AGACTTCGTATGCAAAAGGAACTTGCAATAGCTCCCACTGACTGGATGCAGGAGTACCGATGCCTGCTCA
CCCTGGAAGGACTGCAGACCGTTGTAGGACAGTGTCTCCACAGGATACAGGTGCTGCAAGCAGCTGTGAC
AGAGCAACTTCCAGGAGAATGCCTTGCAGAGACGCGCACTCAGGCCTCGTCCGTTTGCGGAGGAGAGGTG
GACTCTGCCTGCAGCCCTGAGCTCCTTCTCTATGCTAGCACCGAGGAGCTGCAGACCTTGGCCACCTTGA
AGCTTCAGGTGGCCTTGCTACACCAGCAGATCCATCTAGAAAAGGTTCTGATGGCTGAACTCCTCCCTCT
GATAAACACCCAGGATCCTGGAGGACCGCCTTGGCTGGCCTTGTGTCGGGCTGCGTACAGTCTGCTCTGT
GAGGGAGGCGAACGCTTCCTCACAGTCCTTCGAGATGACCCTGCTGACTAA

Translation (436 aa):
MLGVKGNYLLPADCAHRLVAELQGALDSCADRQRQLERSLRVSRRLLQVWEPARTPSPVPETKEEDPSPA
CAPSSQDLEELELLTQALEKAVRVRKGVSNAGQRDRTPTLTSKAATSGAAAASHPRAPSRGGSRVLGTRS
TKGIQRATAPPKDYPEHRLRSKGDKTHVRTQDQTTGYGPDLRDQQMTPSSAHHTTELFALKEKGTLLQLP
EDFRKAVSRNSCLWAQLNSARTNDSTDATRAAKTQFLHKLQMASGCSSHRPSATEVEAHARILRKACMLL
RLRMQKELAIAPTDWMQEYRCLLTLEGLQTVVGQCLHRIQVLQAAVTEQLPGECLAETRTQASSVCGGEV
DSACSPELLLYASTEELQTLATLKLQVALLHQQIHLEKVLMAELLPLINTQDPGGPPWLALCRAAYSLLC
EGGERFLTVLRDDPAD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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