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Report for CCDS5708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5708.1 Public Homo sapiens 7 TRIP6 24 110 108 CCDS HistoryNCBI Gene:7205Re-query CCDS DB by CCDS ID:5708.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000200457.9 ENSP00000200457.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000200457.9Link to Ensembl Protein Viewer:ENSP00000200457.4Re-query CCDS DB by Nucleotide ID:ENST00000200457Re-query CCDS DB by Protein ID:ENSP00000200457
Original member Current member NCBI NM_003302.3 NP_003293.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003302.3Link to Protein Sequence:NP_003293.2Re-query CCDS DB by Nucleotide ID:NM_003302Re-query CCDS DB by Protein ID:NP_003293Link to BLAST:NP_003293.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003293.2 476 Q15654-1 476 100% 0 0

Chromosomal Locations for CCDS 5708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100867498 100867606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100867861 100867988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100868108 100868233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100868495 100868866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100870370 100870463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100870574 100870743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100871543 100871721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100872624 100872744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100873172 100873303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGTCGGGGCCCACCTGGCTGCCCCCGAAGCAGCCGGAGCCCGCCAGAGCCCCTCAGGGGAGGGCGATCC
CCCGCGGCACCCCGGGGCCACCACCGGCCCACGGAGCAGCACTCCAGCCCCACCCCAGGGTCAATTTTTG
CCCCCTTCCATCTGAGCAGTGTTACCAGGCCCCAGGGGGACCGGAGGATCGGGGGCCGGCGTGGGTGGGG
TCCCATGGAGTACTCCAGCACACGCAGGGGCTCCCTGCAGACAGGGGGGGCCTTCGCCCTGGAAGCCTGG
ACGCCGAGATAGACTTGCTGAGCAGCACGCTGGCCGAGCTGAATGGGGGTCGGGGTCATGCGTCACGGCG
ACCAGACCGACAGGCATATGAGCCCCCGCCACCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATCCA
GCCTCGCCGCTCCCAGCGTCTCCCTATGGGGGCCCCACTCCAGCCTCTTACACTACCGCCAGCACCCCGG
CTGGCCCAGCCTTCCCCGTGCAAGTGAAGGTGGCACAGCCAGTGAGGGGCTGCGGCCCACCCAGGCGGGG
AGCCTCTCAGGCCTCTGGGCCCCTCCCGGGCCCCCACTTTCCTCTCCCAGGCCGAGGTGAAGTCTGGGGG
CCTGGCTATAGGAGCCAGAGAGAGCCAGGGCCAGGGGCCAAAGAGGAAGCTGCTGGGGTCTCTGGCCCTG
CAGGAAGAGGAAGAGGAGGCGAGCACGGGCCCCAGGTGCCCCTGAGCCAGCCTCCAGAGGATGAGCTGGA
TAGGCTGACGAAGAAGCTGGTTCACGACATGAACCACCCGCCCAGCGGGGAGTACTTTGGCCAGTGTGGT
GGCTGCGGAGAAGATGTGGTTGGGGATGGGGCTGGGGTTGTGGCCCTTGATCGCGTCTTTCACGTGGGCT
GCTTTGTATGTTCTACATGCCGGGCCCAGCTTCGCGGCCAGCATTTCTACGCCGTGGAGAGGAGGGCATA
TTGCGAGGGCTGCTACGTGGCCACCCTGGAGAAATGTGCCACGTGCTCCCAGCCCATCCTGGACCGGATC
CTGCGGGCTATGGGGAAGGCCTACCACCCTGGCTGCTTCACCTGCGTGGTGTGTCACCGCGGCCTCGACG
GCATCCCCTTCACAGTGGATGCTACGAGCCAGATCCACTGCATTGAGGACTTTCACAGGAAGTTTGCCCC
AAGATGCTCAGTGTGCGGTGGGGCCATAATGCCTGAGCCAGGTCAGGAGGAGACTGTGAGAATTGTTGCT
CTGGATCGAAGTTTTCACATTGGCTGTTACAAGTGCGAGGAGTGTGGGCTGCTGCTCTCCTCTGAGGGCG
AGTGTCAGGGCTGCTACCCGCTGGATGGGCACATCTTGTGCAAGGCCTGCAGCGCCTGGCGCATCCAGGA
GCTCTCAGCCACCGTCACCACTGACTGCTGA

Translation (476 aa):
MSGPTWLPPKQPEPARAPQGRAIPRGTPGPPPAHGAALQPHPRVNFCPLPSEQCYQAPGGPEDRGPAWVG
SHGVLQHTQGLPADRGGLRPGSLDAEIDLLSSTLAELNGGRGHASRRPDRQAYEPPPPPAYRTGSLKPNP
ASPLPASPYGGPTPASYTTASTPAGPAFPVQVKVAQPVRGCGPPRRGASQASGPLPGPHFPLPGRGEVWG
PGYRSQREPGPGAKEEAAGVSGPAGRGRGGEHGPQVPLSQPPEDELDRLTKKLVHDMNHPPSGEYFGQCG
GCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLEKCATCSQPILDRI
LRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFAPRCSVCGGAIMPEPGQEETVRIVA
LDRSFHIGCYKCEECGLLLSSEGECQGCYPLDGHILCKACSAWRIQELSATVTTDC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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