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Report for CCDS36699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36699.1 Public Mus musculus 13 Aopep 23 108 98 CCDS HistoryNCBI Gene:72061Re-query CCDS DB by CCDS ID:36699.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36699.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091560.10 ENSMUSP00000089148.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091560.10Link to Ensembl Protein Viewer:ENSMUSP00000089148.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091560Re-query CCDS DB by Protein ID:ENSMUSP00000089148
Original member Current member NCBI NM_001289924.1 NP_001276853.1 Accepted alive Link to Nucleotide Sequence:NM_001289924.1Link to Protein Sequence:NP_001276853.1Re-query CCDS DB by Nucleotide ID:NM_001289924Re-query CCDS DB by Protein ID:NP_001276853Link to BLAST:NP_001276853.1
Original member Current member NCBI NM_001289926.1 NP_001276855.1 Accepted alive Link to Nucleotide Sequence:NM_001289926.1Link to Protein Sequence:NP_001276855.1Re-query CCDS DB by Nucleotide ID:NM_001289926Re-query CCDS DB by Protein ID:NP_001276855Link to BLAST:NP_001276855.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276853.1 823 Q8BXQ6-1 823 100% 0 0
NP_001276855.1 823 Q8BXQ6-1 823 100% 0 0

Chromosomal Locations for CCDS 36699.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 63015167 63015963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63033023 63033189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63061035 63061194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63068040 63068285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63156546 63156735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63170941 63171047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63190479 63190581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63191066 63191173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63199507 63199550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63210106 63210166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63240087 63240155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63240257 63240331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63282142 63282258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63296858 63296944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63298712 63298852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGGACATAAAGCTGGACCCTTCCCGGGATGATCTGCCTCTCATGGCCAACACCAGCCACATGCTTGTGA
AGCACTACATACTGGATTTGGATGTGGACTTTGGAAATCAAGTCATTGAGGGCAACATAGTGCTTTTCTT
TGGAGATGGAAACAGATTTAAAAACCAGTCGCGTTCTACCCAGGAAACCTTCCAGATGGAGTCAGAGGAG
GCTGACATATTTAGGACAGCTGAACCCTGCCATGTTCCTGAGATGGATTCGAGTACCTTCTCACCTAAGA
TGGGACATAGAGAATGTGCAGTCTGTGGTAAAGGTGATCAAGATGCCTTTGATAACGATGGTAACCATGA
CAACCAGGAACGTGATTCTGAGATCTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAAAAGG
GATTTCTTGCTAGTGTTGGACTGCTGTGATTTATCTGTGCTAAAGGTAGAGGAGGTGGATGTGGCTGCTG
TGCCAGGCCTTGAGAAATTTACTAAAGCTCCAAAGCTCTTGGCTACTCCTGAGAAGCTCAGGTGTGAGAT
TGTCCGTGACCTTGTGGCTCTGCCTGCAGATGCTTGGAGGGAGCAGTTAGACTGCTACACTCGTTGCAGC
CAGGCTCCTGGCTGTGGGGAGCTCTTGATTGACTCTGACAATTGGAGCTTACGGATCAGGAAGACGGGGA
CTTCGACACCTGCTGACTTTCCTCGTGCCATCAGAATATGGTATAAAACTAAACCTGAGGGGCAGTCAGT
AGCTTGGACAACAGACCAGAATGGCAGGCCATGTGTTTATACTATGGGATCCCCCATCAACAACAGGGCC
CTTTTTCCATGCCAGGAACCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCAGCTGCATCTT
TTGTTGTTTTAATGAGTGGAGAAAATTCTGCCAAGCCCACACCACTTCGAGAAGGATACATGAGCTGGCA
TTACTATGTGACCATGCCAATGCCGGCCTCTACCTTTGCAATTGCAGTGGGGTGCTGGACAGAAATGAAG
CCCAAGGCATCCCCACCAGATGATCTGATGACTGAGCACTCTCTCCCCCTCTCGCCATCGGAAGCGGACT
TGAGGTATGATAACACCTGCAATCATATGGAATACCCTTGCAGGTTCCAGAGTGCGTCCGCTGCCTCCCA
GGACATCATTCCTTATCGAGTGTTTGCCCCAGTGTGCCTTGAGGGTGCCTGCCAAGAGGCCCTGCTGTGG
CTGATCCCTTCTTGCCTCTCAGCTGCACACTCTGTCCTGGGAACACACCCTTTCTCCCGGCTGGACATAC
TCATTGTCCCCACCAACTTTCCAAGTCTGGGAATGGCCAGCCCACACATCATCTTCCTCTCTCAGAGCAC
CTTAACAGGCACGAGCCATCTCTGTGGGACCCGTCTTTGCCATGAAATTGCTCACTCCTGGTTTGGCCTA
GCCATTGGGGCCCGAGACTGGACAGAGGAGTGGCTCAGTGAAGGATTTGCCACGCATTTGGAAGATATAT
TTTGGGCTGAGGCACAGCAGCTGCCCCCCCATGAGGCCCTGGAGCAGCAGGAGCTGAGGGCTTGCCTGCG
CTGGCACCGCCTGCAGGATGAGCTTCGGAACTCCCCAGAGGGAATGCAGGTGTTAAGACCCAACAAAGAA
GAGACTGGCCATGTGAGTGCTTCAGGTGCATCTGTTGTCAAGCATGGACTCAATCCAGAGAAGGGCTTCA
TGCAGGTTCATTACTTAAAGGGCTACTTCCTTCTTCGGTTCCTAACCAGAACACTTGGAGAGAAAATTTA
TTTTCCGTTTTTAAGAAAATTTGTGCATCTGTTTCATGGGCAGCTGATTCTTTCCCAGGATTTTCTTCAA
ATGCTGTTGGAGAACATTCCAGAAAACAAAAGGCTCGGCCTGTCTGTTGAGAACATCGTCCGAGATTGGC
TTGAGTGTTCCGGAATACCTAAGGCGCTGCAGGAGGAGCGCAAGGCCGAGGACTGCTCGCCGAGTAGGCT
CGCACGGCAAGTAGGCTCCGAGGTGGCGAAATGGATTCGAGTCAACCGCAGACCCCGAAAACGCAAACGA
GGGAAGCGAGAAGTCGCCTTTGAAAAGCTTTCTCCAGACCAGATCGTCTTGCTTTTGGAGTGGCTCTTAG
AGCAGAAGACGCTGAGCCCTCAGACACTGCACTGTCTCCAGCAGACTTACCATCTCCCAGAGCAGGATGC
AGAGGTTCGCCATCGATGGTGTGAACTGGTTATTAAGCACAAGTACACAAAGGCATACAATCAGGTGGAG
AGGTTCCTACTGGAGGACCAGGCCATGGGCATATACCTGTATGGGGAGCTGATGGTGAGTGAGGACGCCA
GGCTGCAGCAGCTAGCCCACAGGTGCTTTGAGCTGGTGAAGGAACACATGGACAGAGCATCGGCCCAGGT
GGTGACTGAAATGCTGTTCTAA

Translation (823 aa):
MDIKLDPSRDDLPLMANTSHMLVKHYILDLDVDFGNQVIEGNIVLFFGDGNRFKNQSRSTQETFQMESEE
ADIFRTAEPCHVPEMDSSTFSPKMGHRECAVCGKGDQDAFDNDGNHDNQERDSEISSSKYCCDTGNHGKR
DFLLVLDCCDLSVLKVEEVDVAAVPGLEKFTKAPKLLATPEKLRCEIVRDLVALPADAWREQLDCYTRCS
QAPGCGELLIDSDNWSLRIRKTGTSTPADFPRAIRIWYKTKPEGQSVAWTTDQNGRPCVYTMGSPINNRA
LFPCQEPPVAMSTWQATVRAAASFVVLMSGENSAKPTPLREGYMSWHYYVTMPMPASTFAIAVGCWTEMK
PKASPPDDLMTEHSLPLSPSEADLRYDNTCNHMEYPCRFQSASAASQDIIPYRVFAPVCLEGACQEALLW
LIPSCLSAAHSVLGTHPFSRLDILIVPTNFPSLGMASPHIIFLSQSTLTGTSHLCGTRLCHEIAHSWFGL
AIGARDWTEEWLSEGFATHLEDIFWAEAQQLPPHEALEQQELRACLRWHRLQDELRNSPEGMQVLRPNKE
ETGHVSASGASVVKHGLNPEKGFMQVHYLKGYFLLRFLTRTLGEKIYFPFLRKFVHLFHGQLILSQDFLQ
MLLENIPENKRLGLSVENIVRDWLECSGIPKALQEERKAEDCSPSRLARQVGSEVAKWIRVNRRPRKRKR
GKREVAFEKLSPDQIVLLLEWLLEQKTLSPQTLHCLQQTYHLPEQDAEVRHRWCELVIKHKYTKAYNQVE
RFLLEDQAMGIYLYGELMVSEDARLQQLAHRCFELVKEHMDRASAQVVTEMLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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