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Report for CCDS6178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6178.1 Public Homo sapiens 8 TTPA 24 110 108 CCDS HistoryNCBI Gene:7274Re-query CCDS DB by CCDS ID:6178.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260116.5 ENSP00000260116.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260116.5Link to Ensembl Protein Viewer:ENSP00000260116.4Re-query CCDS DB by Nucleotide ID:ENST00000260116Re-query CCDS DB by Protein ID:ENSP00000260116
Original member Current member NCBI NM_000370.3 NP_000361.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000370.3Link to Protein Sequence:NP_000361.1Re-query CCDS DB by Nucleotide ID:NM_000370Re-query CCDS DB by Protein ID:NP_000361Link to BLAST:NP_000361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000361.1 278 P49638 278 100% 0 0

Chromosomal Locations for CCDS 6178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 63061252 63061425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63064206 63064316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63065904 63066097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63072935 63073088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63085818 63086021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGCAGAGGCGCGATCCCAGCCCTCGGCGGGGCCGCAGCTCAACGCGCTACCGGACCACTCTCCGTTGC
TGCAGCCGGGCCTGGCGGCGCTGCGGCGCCGGGCCCGGGAAGCTGGCGTCCCGCTCGCGCCGCTGCCGCT
CACCGACTCCTTCCTGCTGCGGTTCCTGCGCGCCCGGGATTTCGATCTGGACCTGGCCTGGCGGTTACTA
AAAAACTATTATAAGTGGAGAGCAGAATGTCCAGAAATAAGTGCAGATCTACACCCTAGAAGTATTATTG
GCCTCCTAAAGGCTGGCTACCATGGAGTCCTGAGATCCAGGGATCCCACTGGCAGCAAAGTTCTTATTTA
CAGAATCGCACACTGGGACCCCAAAGTTTTTACAGCTTATGACGTATTTCGAGTAAGTCTAATCACATCC
GAGCTTATTGTACAGGAGGTAGAAACTCAGCGGAATGGAATCAAGGCTATCTTTGATCTGGAAGGTTGGC
AGTTTTCTCATGCTTTTCAAATCACTCCATCCGTAGCCAAGAAGATTGCTGCTGTACTTACGGATTCATT
TCCATTGAAAGTTCGTGGCATCCATTTGATAAATGAACCAGTAATTTTCCATGCTGTCTTTTCCATGATC
AAACCATTCCTGACTGAAAAAATTAAGGAACGGATTCACATGCATGGGAACAACTACAAACAAAGCTTGC
TTCAGCATTTCCCAGACATTCTTCCTCTGGAATATGGTGGTGAAGAATTCTCCATGGAGGACATTTGTCA
GGAATGGACAAATTTTATAATGAAGTCTGAAGATTATCTCAGCAGCATTTCTGAGAGCATTCAATGA

Translation (278 aa):
MAEARSQPSAGPQLNALPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLL
KNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITS
ELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI
KPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSEDYLSSISESIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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