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Report for CCDS57754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57754.1 Public Mus musculus X Rhox13 23 108 98 CCDS HistoryNCBI Gene:73614Re-query CCDS DB by CCDS ID:57754.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000152730.3 ENSMUSP00000117271.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152730.3Link to Ensembl Protein Viewer:ENSMUSP00000117271.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000152730Re-query CCDS DB by Protein ID:ENSMUSP00000117271
Original member NCBI NM_001185002.1 NP_001171931.1 Updated not alive Link to Nucleotide Sequence:NM_001185002.1Link to Protein Sequence:NP_001171931.1Re-query CCDS DB by Nucleotide ID:NM_001185002Re-query CCDS DB by Protein ID:NP_001171931
Current member NCBI NM_001185002.2 NP_001171931.1 Accepted alive Link to Nucleotide Sequence:NM_001185002.2Link to Protein Sequence:NP_001171931.1Re-query CCDS DB by Nucleotide ID:NM_001185002Re-query CCDS DB by Protein ID:NP_001171931Link to BLAST:NP_001171931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171931.1 232 F6YCR7 232 100% 0 0

Chromosomal Locations for CCDS 57754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38121290 38121822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38123074 38123119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38129742 38129861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCCCACGGGGTCCCTTTTGACCACAATTACTACATTGTGGAGTGCAAGGAGGAAACAAATGCTGAAG
CCCAGGCAGGGGCCATGGCCGCCACCTCAACCGAGGAGGCCCCAGGGGCTGTGGAGGTGGCGCAGGCAGC
AGTGGCGAGCAGCCACGACAGTGGAGGAGCCATAGGCTGTGCCACTGTCAAGGAGAGTGAGAGCGACTCG
GAGAGTGAGAGCGACTCGGAGAGTGAGAGCGACTCCTCCGACTCCTCCGACGAGAGTGATGACGACTCGA
GCACCAGCGACGAGGATACTTCAGATCCTGAGGAGGCGGCAGCTCCCTCGGTGGCTGCGGTGGCTGCTGC
TGCCGCTCCTCCAACTGTTCCTGCTGCCGCTGCTATTCAGATTCCGGGGCCGTACCGCTACCGCCCCCCT
CGCCGCCATGTTCGCCGTCGTCGCCGTGGACCGCCATTCCACTTCGCACAGTGGCAGGTCGAGGAAATGG
AAAGCCTGTTTGAAGAGACCCAGTACCCGGATTTGCTTACAAGGGGAGAGCTTGCAAGAACTTTGAATGT
GCCTGAGGTCAAAGTGAAGGTGTGGTTTACCAATCGGAGAGCGAAGCAGAGGAAGATTGAGAGACGTGAA
ATGCTGAGAAATATTCCGCCTGGTGCTGAAGACTTCATTTTCATAACCGATTTTGAAGAGCCTTCTTAA

Translation (232 aa):
MAHGVPFDHNYYIVECKEETNAEAQAGAMAATSTEEAPGAVEVAQAAVASSHDSGGAIGCATVKESESDS
ESESDSESESDSSDSSDESDDDSSTSDEDTSDPEEAAAPSVAAVAAAAAPPTVPAAAAIQIPGPYRYRPP
RRHVRRRRRGPPFHFAQWQVEEMESLFEETQYPDLLTRGELARTLNVPEVKVKVWFTNRRAKQRKIERRE
MLRNIPPGAEDFIFITDFEEPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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