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Report for CCDS51427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51427.1 Public Mus musculus 5 Ccdc146 23 108 98 CCDS HistoryNCBI Gene:75172Re-query CCDS DB by CCDS ID:51427.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115245.7 ENSMUSP00000110900.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115245.7Link to Ensembl Protein Viewer:ENSMUSP00000110900.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115245Re-query CCDS DB by Protein ID:ENSMUSP00000110900
Original member Current member NCBI NM_029195.1 NP_083471.1 Accepted alive Link to Nucleotide Sequence:NM_029195.1Link to Protein Sequence:NP_083471.1Re-query CCDS DB by Nucleotide ID:NM_029195Re-query CCDS DB by Protein ID:NP_083471Link to BLAST:NP_083471.1

Chromosomal Locations for CCDS 51427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 21293292 21293495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21294453 21294701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21296934 21297071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21297549 21297677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21301228 21301456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21303064 21303288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21305253 21305417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21305513 21305601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21308613 21308783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21309593 21309688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21316786 21316972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21317986 21318213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21319529 21319602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21321164 21321340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21322744 21322801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21330540 21330749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21333020 21333102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21399617 21399838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2934 nt):
ATGGAATACAATAGCAAAGATGCAGAAGAAGAAACTGAAGATGAAGAGGAGGGACTGAAGGAGGCGGAGG
GGGAGGAACAGGAGAAGGAGGAGGTAACAGCAACCTCAGAAACAGACGATGACCAAGAAGACCTCCCTTC
TGTCTTAGTGCCTACAGTTAACATTCGGGAGGAGCGGCTCATCAATTTAGCTGAAACACCAGCTTTCCTC
TGTCTGCATGAGCTGCACTCCAAGGGAAAACTTCCTGGAACCAGAATGGCAGAGTTGAAAGCCAAGTACA
CCTTGCTACACGATACAGTGGTGAGCACGCAGGAGTCTGAGGTGCAGCTACTGGAGAACGCCAAGCGCTT
CACGGAGCAGATCCAGCAGCAGCAGGTCTGTCTGCAGCAGGCCGAAGACTTCCCCAACGTCTTCACCACT
GAGGTCTGCAAACTTCGGGAGCAGCTGCTCAAGTACCAAAATGAATACACGGCAGCGCAAGAAAGGGAGT
ACAATATTCAGTACAGGCTGACTAGCTTAACAGAAGAAAAGAGTATCATATTAAAGGAATTTGAGAAGAT
ACCTAAGCCAGGAGAAATAGAGAAGAAGACGAGGCTCCTGAAAGAAAGCACTGAGGAACTGCGCAAGGAG
GTGATTCAGAGGAGACTGGAGATCAAAAACCTGCGGGAAGATGTGGTGCTCAAGCAGAAGCAGCTAGTGA
GGGAGCAGAAGGAGCTGGAGGAGCTGATGGAGTATCAGGTTGGCTTGAAGGATGACGTGGTCCACCATCA
AAGTGTTCCTGTACAAATTACAAAGGAGATAGAAAAAATGACACGCAAAAAAGTAGAAACAGAGAAGAAA
AATATTGTCTTGGAATCTGAGTTGAAAGAGCTAAGTGACTCTTTAAAGAAGCTTGAAAACAAAGTCAACA
CTCTTGCGGAAGAAAGGGATGACATAATGAAGGAAGTTGAGGGCAAGCGAACCTTACTAGAAGTCAAAGA
ACGAGAGTATGGCCAACTGCTTAAACTATTGGAACTAACCAAAGAGAACGAAGCCTCCTCGCTAGCTGAA
AGAGGGATCTTGGATATCAATCTACGGAACTGTCTCATCGACAAGCAGAACTACCATGATGAACTTTCTC
GTAAGCAAAGAGAGAAAGAACGAGATTTTCGGAATCTGAAGAAGACAGAGCTGCTCCTGAAAGTGTCTTT
GGATGCGCTCACTCAGGCACAAGCCATGAATCAAAGGCTTCTACTAGAGATGGAAGCTATCCCAAAAGAA
TACCTTACATTGCCTGAACGAAGGAAAGAGCTCCACAAAGAGGTTGATCTAGCTAGGAGAAATCTGGCTC
AACAGAAATCTCTGTCAGAAGCTGAGGCCAAGTTAGTGGAGCAGCAGATTGCACAGGAGAACAAACTTCT
AAAGGAGCAAGAAAGTTTGCGGGAGCTGGTGTTCAACCTCGGGCGAATGACTCAGATCAAAATAGATGAG
AAAGAACAAAAGGCTAAGGATTTCCTGAAAGCCCAGCGAAGATATAGTGAGATTGTTAAGGAAATCAAAT
CAAAGGACCTTGAAATCAGGCTATACAAGAAGAGAAAGCATGAAATTCATAGGAGACTCAGAGAATTTGC
CAGCTTGTATGATACAATTAGAAATGAAAGAAACAAATTTGTAAACCTACTTCACAAAGCTCATCAGAAA
GTAAATGAGATAAAAGAAAGACTCAAAATGTCATTAAATGAGCTGGAAATCTTAAGGAACAGCGCTGTCT
CTCAAGAACGAAAGCTACAAAACGCCATGCTAAAGCATTCCAACAATGTGACCATCAAGGAGAGCATACA
GAACGATGTGTGCAAAATCACTGCTAAACTCCAGGAAATGAAGGAGAAGAAGGAGGCCCAGCTGACCAGC
ATGGACAGGCTGGCCAGCATGATCACCGTGATCGAAGAGGAGATGGTGCAGCTGCGCAAGAAGTATGAGA
AGGCCGTACAGCGGCGGAATGAAAGTGGTGTTCAGCTGATCGAGCGGGAAGAAGAAGTGTGCATTTTTTA
CGAAAAAGTGAATGTCCAAGAGAAGATAAAACTTCATCAGGATGTTGAAATCCACATTCTGGAAGAAAAA
ATCCGATTCCTAAAACTGAGGATTGCCGAAAAGCAAAGGCAGATTTCTGTGACACGGAAACTAGTGCCAA
TCAAGAAGTCCCTGGATGCCGACCTGGCTGTGATCCAGATTCAGTTTTCACAGTGCACAGACAGGATAAA
AGACCTGGAGAAACTCTTTGTGAACCCTGACAGCAAGGGCAGGGTCCGCTTCATTAAAGGGAAAGATCTG
ACTGAAGAAGAAATGATCAAGAAATTAGATATGCTGGAACTTCAGATAGCCAAGAAGGAGGAGAAGCTCC
TGGAGAAGGATTTCATCTATGAGCAGGTGTCCCAGCTCACAAACAGGCTCAAAGGCAAAACTCAGGCTTG
CAAGAAGGACACACTGCTCTTAGCCAAGAAGATGAATAGCTACCAACAAAAGATCAAAGTTGTTACCCAG
GAAATGATGGCTCTTGTTGCTGAGCTGTCCATGAAACAAGCCCTGACCATTGAACTCCAAAAGGAGGTGA
GAGAGAAAGAAGAATTCATCTTCTCCTGCAGTGCCAGGATAGAAAAGGGCCTCCCGCTCAACAGAGAGAT
TGAGAAGGACTGGCTGAAGGTGCTTCGAGATGAAGAAATGTATGCCTTTGCGACTGCTGAGATGTCTCGG
GAGTACATGGAAACGGATTATCGGCAGCTGCCCAATGGTGTTTATACAACTGCAGAGCAGCGTCCAAACG
CCTACATGCCTGAAGCAGATACCGAGCTTCCTCTGCCCAAACCGTATGGCGCGATGGCTCCATTTAAGCC
CTCTGAACCCGGAGCCAACAGGAGGCACATTAGGAAACCTGTTGTAAAGCCCATTGAAATCTAA

Translation (977 aa):
MEYNSKDAEEETEDEEEGLKEAEGEEQEKEEVTATSETDDDQEDLPSVLVPTVNIREERLINLAETPAFL
CLHELHSKGKLPGTRMAELKAKYTLLHDTVVSTQESEVQLLENAKRFTEQIQQQQVCLQQAEDFPNVFTT
EVCKLREQLLKYQNEYTAAQEREYNIQYRLTSLTEEKSIILKEFEKIPKPGEIEKKTRLLKESTEELRKE
VIQRRLEIKNLREDVVLKQKQLVREQKELEELMEYQVGLKDDVVHHQSVPVQITKEIEKMTRKKVETEKK
NIVLESELKELSDSLKKLENKVNTLAEERDDIMKEVEGKRTLLEVKEREYGQLLKLLELTKENEASSLAE
RGILDINLRNCLIDKQNYHDELSRKQREKERDFRNLKKTELLLKVSLDALTQAQAMNQRLLLEMEAIPKE
YLTLPERRKELHKEVDLARRNLAQQKSLSEAEAKLVEQQIAQENKLLKEQESLRELVFNLGRMTQIKIDE
KEQKAKDFLKAQRRYSEIVKEIKSKDLEIRLYKKRKHEIHRRLREFASLYDTIRNERNKFVNLLHKAHQK
VNEIKERLKMSLNELEILRNSAVSQERKLQNAMLKHSNNVTIKESIQNDVCKITAKLQEMKEKKEAQLTS
MDRLASMITVIEEEMVQLRKKYEKAVQRRNESGVQLIEREEEVCIFYEKVNVQEKIKLHQDVEIHILEEK
IRFLKLRIAEKQRQISVTRKLVPIKKSLDADLAVIQIQFSQCTDRIKDLEKLFVNPDSKGRVRFIKGKDL
TEEEMIKKLDMLELQIAKKEEKLLEKDFIYEQVSQLTNRLKGKTQACKKDTLLLAKKMNSYQQKIKVVTQ
EMMALVAELSMKQALTIELQKEVREKEEFIFSCSARIEKGLPLNREIEKDWLKVLRDEEMYAFATAEMSR
EYMETDYRQLPNGVYTTAEQRPNAYMPEADTELPLPKPYGAMAPFKPSEPGANRRHIRKPVVKPIEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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