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Report for CCDS19621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19621.1 Public Mus musculus 5 Iqcd 23 108 98 CCDS HistoryNCBI Gene:75732Re-query CCDS DB by CCDS ID:19621.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094391.5 ENSMUSP00000091955.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094391.5Link to Ensembl Protein Viewer:ENSMUSP00000091955.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094391Re-query CCDS DB by Protein ID:ENSMUSP00000091955
Original member NCBI NM_029408.2 NP_083684.1 Updated not alive Link to Nucleotide Sequence:NM_029408.2Link to Protein Sequence:NP_083684.1Re-query CCDS DB by Nucleotide ID:NM_029408Re-query CCDS DB by Protein ID:NP_083684
Current member NCBI NM_029408.3 NP_083684.1 Accepted alive Link to Nucleotide Sequence:NM_029408.3Link to Protein Sequence:NP_083684.1Re-query CCDS DB by Nucleotide ID:NM_029408Re-query CCDS DB by Protein ID:NP_083684Link to BLAST:NP_083684.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083684.1 458 Q9D3V1-1 458 100% 0 0

Chromosomal Locations for CCDS 19621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120600119 120600838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120602326 120602559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120605129 120605200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120606635 120606985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGCCTTGGACCAGGTCAGCATACCCCCTTCCTACCACGGACTGGCCATCCAAAGAATCCCACTGAGAA
CAGGTCTAGTCCCAGCAGAGCCGATGAAGACCTTAGTCCCATCCAAATCCAAGCTCAACACCATCGAGGC
CAAGAGGATCATGTCAGTCCTGGATGAGGCCATACACAAGATAGAGCTGATAACCCTGATGTCCTACATG
GAGTCCCACCCAGAGGCTCTGGAGGACACGCTGCCCGAGGATTTCGTGAGAGCCCTAAGAGAGCACTTGG
ACATTGGCCAGACCCTGGTGGAGAGGGCCAGCATCCTGCAGAGGAGACACAAGAAGCTGGAGGAAGAGGA
AGAAGCCGAGGAAACTAGGAACCAGGAACGCCTACTGTCCCTAGAGCTGCACAAGGTGAACCTGCTGACG
CTGGCGCACCAGTTCCGAGACTCCACCAAGACTGTCCTGAGGCTCGTGCTGGGCGAGCCTCAGTTCACCA
GGCTGTTACAGGTACAGGCGCCAGGCAGAAGCCCGGGGGCCCAGTGCCTCCTCGACGGTCTGGTGGAGCT
TCGAGGTTTCCTCTTTGAGAAGCTCCTCACCAGCCCCATGGAAGTCAGGGAGAAGAACCAATTCATACAG
GACATCAGCCGGAGGAGCGAGAGGAACCAGGAGGTCATCGATGACCTCCAGGCTGAGCTGGCCAACGTGC
TGAAGAACAAGGAGTCAGAGGTGGAGAAGGAGAACTTTGTGATCCAGGAGCTGAAGAACCATCTGCACCA
GGTGTTCAAGTTTTCGGAGAACAGCCTCCTCCGCACGAAGCAGGAGGCCGAGAAGCAGCAGAAGGTGGAT
TTCCGGGCCTCCCAGGTCAGGCTGGCCAAGACGCAGCAAGATATCCTGGCGCTTCGGGCACAGTACCACA
ACCTGGTCATGGAGAACCGGGAGGCAGAGCAGGCACTAAGGAAGAAAAAATACAAAGTGGAGACAGAAAT
CGAGAACTGGATCCAGAAATATGACATGGAGATGGGCGAGAAGCAGGACGAATACGAGGACCTGGAGAGC
ATCCACAAGGAGGAGAAGCTGCAGCTGGAGGAGCTGAGGGAAAGGCACGCGGTGCTGGTGGAGGAGTTCT
CTCAGATCCGGGCCGAGAGCGAGATCAATTCCAAGAAGCGGGTGGAGGCAGAGCGCGAGATGGTGCGCAT
GGTGAGAGCCGCCACGCTCATCCAGGCGGTGTGGAAGGGCTACCTGGTGCGCTCCATACTCAGGTCCAAG
AAGAAGAAGCGGGGCAAGGGGAAGGGCAAAGACAAGGGGAAGGGCAAGGAGAAGCCCAAGGAAGAAAAGG
CCAAGGAGAAGAAACCCAAGGCCAAGGGCAAAGGCAAGAAGAAGTGA

Translation (458 aa):
MALDQVSIPPSYHGLAIQRIPLRTGLVPAEPMKTLVPSKSKLNTIEAKRIMSVLDEAIHKIELITLMSYM
ESHPEALEDTLPEDFVRALREHLDIGQTLVERASILQRRHKKLEEEEEAEETRNQERLLSLELHKVNLLT
LAHQFRDSTKTVLRLVLGEPQFTRLLQVQAPGRSPGAQCLLDGLVELRGFLFEKLLTSPMEVREKNQFIQ
DISRRSERNQEVIDDLQAELANVLKNKESEVEKENFVIQELKNHLHQVFKFSENSLLRTKQEAEKQQKVD
FRASQVRLAKTQQDILALRAQYHNLVMENREAEQALRKKKYKVETEIENWIQKYDMEMGEKQDEYEDLES
IHKEEKLQLEELRERHAVLVEEFSQIRAESEINSKKRVEAEREMVRMVRAATLIQAVWKGYLVRSILRSK
KKKRGKGKGKDKGKGKEKPKEEKAKEKKPKAKGKGKKK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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