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Report for CCDS57137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57137.1 Public Mus musculus 19 Ms4a18 23 108 98 CCDS HistoryNCBI Gene:76002Re-query CCDS DB by CCDS ID:57137.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177684.2 ENSMUSP00000136529.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177684.2Link to Ensembl Protein Viewer:ENSMUSP00000136529.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177684Re-query CCDS DB by Protein ID:ENSMUSP00000136529
Original member Current member NCBI NM_001251849.1 NP_001238778.1 Accepted alive Link to Nucleotide Sequence:NM_001251849.1Link to Protein Sequence:NP_001238778.1Re-query CCDS DB by Nucleotide ID:NM_001251849Re-query CCDS DB by Protein ID:NP_001238778Link to BLAST:NP_001238778.1

Chromosomal Locations for CCDS 57137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10997291 10997455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11000335 11000448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11001895 11002005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11008699 11008755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11011403 11011528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11013267 11013728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGAGCAATCAAGAGAATGTGTCTGCTGTCACCGTCCCCAGTAATGTCCAAGTTATGCAGCCTACATATG
CT
GTGGTCTCTGGAAGCCATGAGCAGCCTTTGGGAAAAACCACCACCTACCCAGCCTCAGCAACAATGCT
C
CAGTATAACCCAGGGAGTGCAAACTTCCAGAACCCACAGGTCATGATCCAGAATCCCGCTGGAACAACA
GGC
CTGCAGGCTGGGCCCACTGGACTACAGTATTCAGCAGGAATGGCTGGCGTGCAGGCTCCACCAGGAG
TA
ATCCAGTACTCACCAGAAGTAACAAGTGTCCAGATCCCGCCTGGAGACCCTCAGAATCCCCTGAACAC
T
GTCCCCGGGCCAACACAGACCTCAAGCCTTCCCCAGTGGAACATGTCCTTTATGACTTTTCCTGAATTT
AAT
CCCAAGAAATTCATAAATGAAGAGGTCAGAACATTAGGGGCCATCCAGATCCTCATTGGCCTATTTC
AT
ATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTC
A
GGGTACCTGATCTGGGGAGGCCTGTCTTTTATCATCTCTGGATCCTTGTCAGTCTTGGCTGAAAAGAAT
TCC
AACAGTTGTGTGGTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTA
TC
ATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATGAGTTCTATGAAGGC
A
GCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATCCTCACCTGCATAGCCTCACATTTTGGA
TGC
CAGGCTGTCTGCTGCGCCCATTTTCAGAACATGACAATGTTCCCAACCATATTTGGTGGCAACACAG
TC
AACACAACCACTGGACCTGGCAACACCACCATCCCAAACAGTACCACCAGCATCCCAGTTCAGACCAC
C
CTCCCCAGTAATGTTCCCCTTGAACAAGTATACCAAGATGTAGCCCAGAAATAG


Translation (344 aa):
MSNQENVSAVTVPSNVQVMQPTYAVVSGSHEQPLGKTTTYPASATMLQYNPGSANFQNPQVMIQNPAGTT
G
LQAGPTGLQYSAGMAGVQAPPGVIQYSPEVTSVQIPPGDPQNPLNTVPGPTQTSSLPQWNMSFMTFPEF
N
PKKFINEEVRTLG
AIQILIGLFHIFSAVNPQLYNTQFFVVPLLGVSGYLIWGGLSFIISGSLSVLAEKN
S
NSCV
VNSSIGMNVVSSIFSLTGIIIIIVQLSIYPSEISPLMSSMKAAAGSILPFALLEFILTCIASHFG
C
QAVCCAHFQ
NMTMFPTIFGGNTVNTTTGPGNTTIPNSTTSIPVQTTLPSNVPLEQVYQDVAQK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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