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Report for CCDS50673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50673.1 Public Mus musculus 2 Rtf1 23 108 98 CCDS HistoryNCBI Gene:76246Re-query CCDS DB by CCDS ID:50673.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028767.8 ENSMUSP00000028767.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028767.8Link to Ensembl Protein Viewer:ENSMUSP00000028767.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028767Re-query CCDS DB by Protein ID:ENSMUSP00000028767
Original member Current member NCBI NM_030112.2 NP_084388.2 Accepted alive Link to Nucleotide Sequence:NM_030112.2Link to Protein Sequence:NP_084388.2Re-query CCDS DB by Nucleotide ID:NM_030112Re-query CCDS DB by Protein ID:NP_084388Link to BLAST:NP_084388.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084388.2 715 A2AQ19 715 100% 0 0

Chromosomal Locations for CCDS 50673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119675068 119675280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119692116 119692226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119701118 119701265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119705439 119705643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119710965 119711079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119712009 119712120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119720166 119720301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119721075 119721252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119724825 119724907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119726717 119726804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119726893 119727000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119727538 119727615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119728395 119728516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119728679 119728736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119729894 119729971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119730655 119730750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119732404 119732515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119732785 119732891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGCGCGGTCGCCTTTGTGTGGGTCGAGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGGCGGCAGTGGCGG
TCCCACTGGCAGGCGGGCAAGAGGGGAGTCAGGGCGGCGTCCGGCGTGGAAGCCGGGGGACCACCATGGT
AAAGAAGCGGAAAGGCCGTGTCGTGATCGACTCGGATACGGAAGACAGCGGCAGTGACGAGAACCTGGAT
CAGGAGCTCTTGTCCCTGGCGAAACGGAAGCGCAGTGACTCCGAGGAGAAGGAGCCTCCTGTGAGTCAGC
CTGCAGCCTCATCAGATTCAGAGACCTCCGACAGTGATGATGAGTGGACATTTGGGAGCAATAAAAATAA
GAAGAAAGGAAAAACCAGAAAAGTAGAGAAGAAAGGAGCCATGAAGAAGCAAGCCAACAAAGCTGCCTCC
TCGGGCAGCTCAGACAGAGACAGCTCAGCTGAGAGCTCTGCCCCTGAGGAAGGTGAAGTGTCAGATTCTG
AGAGCAGCAGCTCCTCTTCCAGTTCAGATTCAGACTCCTCGTCAGAAGATGAAGAATTCCATGATGGCTA
TGGAGAGGATCTTATGGGAGATGAGGAAGATAGGGCCCGACTGGAGCAGATGACGGAGAAGGAGAGGGAG
CAGGAGCTCTTCAACCGCATAGAGAAGAGAGAGGTGTTGAAAAGAAGATTTGAAATTAAGAAAAAACTAA
AAACAGCCAAAAAGAAAGAGAAGAAAGAAAAAAAGAAAAAGCAGGAAGAAGAACAAGAAAAGAAGAAGCT
GACACAGATTCAGGAATCTCAGGTTACTTCCCACAATAAAGAACGGCGTTCCAAGCGGGATGAAAAACTA
GATAAGAAATCTCAAGCCATGGAGGAGCTAAAAGCAGAGCGAGAAAAACGGAAGAACAGAACAGCTGAGC
TCCTCGCCAAAAAACAGCCATTGAAAACCAGTGAGGTCTACTCTGACGATGAGGAGGAGGAAGATGATGA
CAAGTCCAGTGAGAAATCGGACCGCTCATCCCGGACATCATCATCTGATGAAGAGGAAGAGAAAGAAGAA
ATCCCTCCAAAATCACAGCCAGTCTCATTACCCGAGGAACTGAATCGGGTTCGGTTATCACGGCATAAGC
TAGAGCGCTGGTGTCACATGCCCTTCTTTGCTAAAACTGTCACAGGATGTTTTGTACGGATTGGCATTGG
AAACCACAATAGCAAGCCAGTTTACCGGGTGGCTGAGATCACGGGTGTTGTGGAAACTGCCAAAGTTTAC
CAGCTGGGTGGCACCAGAACAAATAAAGGGCTCCAGCTACGGCATGGCAATGACCAGCGAGTGTTCCGCC
TAGAGTTTGTGTCCAACCAAGAATTCACTGAAAGTGAATTCATGAAGTGGAAAGAAGCGATGTTTTCTGC
TGGCATGCAGTTGCCCACACTAGATGAAATCAATAAAAAGGAATTATCTATTAAGGAAGCTCTCAATTAT
AAATTCAATGATCAGGACATTGAGGAGATTGTAAAAGAGAAGGAAAGGTTCAGAAAAGCCCCACCAAACT
ATGCTATGAAGAAGACTCAGCTGCTAAAGGAGAAGGCTATGGCTGAGGACCTGGGAGATCAGGACAAAGC
CAAACAAATCCAAGACCAGCTAAATGAGCTAGAGGAGCGAGCAGAGGCCCTGGACCGCCAGCGGACCAAG
AACATATCTGCTATCAGCTACATCAACCAGCGGAATCGGGAGTGGAATATTGTGGAGTCTGAGAAGGCTC
TGGTGGCTGAAAGTCACAACATGAGAAACCAACAGATGGACCCCTTCACCAGGCGGCAGTGCAAACCCAC
CATCGTCTCTAATTCCAGGGATCCAGCTGTTCAGGCTGCCATTTTGGCCCAGCTCAATGCAAAATACGGT
TCTGGGGTATTACCAGATGCTCCAAAGGAAATGAGCAAGGGTCAAGGAAAGGATAAAGATTTGAATTCTA
AGACAGCCAGTGACCTCTCGGAAGACCTGTTCAAAGTGCATGACTTTGACGTGAAGATTGACTTACAGGT
TCCAAGCTCAGAGTCAAAAGCTTTGGCCATTACCTCCAAAGCCCCACCAGCCAAGGACGGAGCTCCGAGG
AGATCTCTGAACTTAGAAGACTACAAAAAACGACGGGGGCTTATTTGA

Translation (715 aa):
MRGRLCVGRAAAVAAAVAAAAVAVPLAGGQEGSQGGVRRGSRGTTMVKKRKGRVVIDSDTEDSGSDENLD
QELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKTRKVEKKGAMKKQANKAAS
SGSSDRDSSAESSAPEEGEVSDSESSSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKERE
QELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKL
DKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEDDDKSSEKSDRSSRTSSSDEEEEKEE
IPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVY
QLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNY
KFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTK
NISAISYINQRNREWNIVESEKALVAESHNMRNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYG
SGVLPDAPKEMSKGQGKDKDLNSKTASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPR
RSLNLEDYKKRRGLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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