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Report for CCDS27052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27052.1 Public Mus musculus 14 Rab2b 23 108 98 CCDS HistoryNCBI Gene:76338Re-query CCDS DB by CCDS ID:27052.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022765.13 ENSMUSP00000022765.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022765.13Link to Ensembl Protein Viewer:ENSMUSP00000022765.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022765Re-query CCDS DB by Protein ID:ENSMUSP00000022765
Original member Current member EBI ENSMUST00000167116.7 ENSMUSP00000131145.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167116.7Link to Ensembl Protein Viewer:ENSMUSP00000131145.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167116Re-query CCDS DB by Protein ID:ENSMUSP00000131145
Original member Current member NCBI NM_172601.3 NP_766189.1 Accepted alive Link to Nucleotide Sequence:NM_172601.3Link to Protein Sequence:NP_766189.1Re-query CCDS DB by Nucleotide ID:NM_172601Re-query CCDS DB by Protein ID:NP_766189Link to BLAST:NP_766189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766189.1 216 P59279 216 100% 0 0

Chromosomal Locations for CCDS 27052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52263710 52263817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52264699 52264767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52266190 52266301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52268642 52268734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52268918 52269000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52275443 52275510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52278914 52278985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52279196 52279241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGACTTACGCTTATCTCTTCAAGTACATCATCATCGGAGACACAGGTGTGGGGAAGTCATGTCTCCTCC
TTCAGTTTACCGACAAGCGGTTCCAGCCCGTGCACGACCTCACAATAGGTGTGGAGTTTGGAGCACGTAT
GGTCAACATCGATGGAAAACAAATCAAACTGCAAATCTGGGATACGGCTGGGCAAGAGTCCTTCCGTTCT
ATCACCCGTTCCTACTACAGGGGAGCAGCTGGAGCCCTGCTGGTGTATGACATCACGAGACGCGAAACCT
TCAACCACCTGACCTCATGGTTAGAGGACGCCCGCCAGCACTCCAGCTCCAACATGGTTATAATGCTGAT
CGGGAATAAGAGTGATCTAGAATCTCGAAGGGATGTGAAGAGAGAGGAAGGAGAGGCCTTTGCTCGTGAG
CACGGCCTTATATTCATGGAAACATCAGCCAAGACAGCCTGCAATGTTGAAGAGGCCTACATTAATACAG
CCAAAGAAATATATAGGAAGATCCAGCAAGGTTTATTTGATGTCCACAATGAGGCAAATGGCATCAAGAT
TGGGCCCCAGCAGTCAATTACCTCCTCAGTAGGACCGTGCTCCCCTCAGCAGAACGTTTCTGACATAGGG
CCTGACTCTGGCTGCTGCTGA

Translation (216 aa):
MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS
ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE
HGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIG
PDSGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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