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Report for CCDS28870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28870.1 Public Mus musculus 17 Unc5cl 23 108 98 CCDS HistoryNCBI Gene:76589Re-query CCDS DB by CCDS ID:28870.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074574.12 ENSMUSP00000074159.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074574.12Link to Ensembl Protein Viewer:ENSMUSP00000074159.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074574Re-query CCDS DB by Protein ID:ENSMUSP00000074159
Original member Current member NCBI NM_152823.4 NP_690036.4 Accepted alive Link to Nucleotide Sequence:NM_152823.4Link to Protein Sequence:NP_690036.4Re-query CCDS DB by Nucleotide ID:NM_152823Re-query CCDS DB by Protein ID:NP_690036Link to BLAST:NP_690036.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690036.4 518 Q6R653-1 518 99.807% 0 1

Chromosomal Locations for CCDS 28870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48459600 48459984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48460485 48460785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48462176 48462438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48463362 48463463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48463577 48463644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48464442 48464542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48464916 48465029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48467316 48467538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGAGCCCCCAGGAGAGCTCTGTTCAACCTTCCCAGTTCCTCCTGTTGGTGGGGATCCCTGTGGCCAGTG
CTCTCCTTCTGGCTCAGTGTCTTCGATGGCACTGCTGTCAGTGGCTGCCAGGGACCTGCCGGAAGCTGGA
TGATCCAGAGGAGCCAGTGTCCCCATCCACTCCATTACCAGAGTATGAGCTCCCGAGGCAGTGCCCAGCC
CCCACACTACCGGAGGTGGCTGCGTTCTACCAGGAACTCCACATGCCTACCCAGGGCCAGACTGTCACCC
GCCAGATGATGCATAAGCTACTGGTGTTTTCTGCTCGAGAGGTGGATCACCGTGGTGGATGCCTGATCCT
GCAGGACACAGGCATCTCCCTGCTCATCCCGCCAGGTGCTGTGACCGTGGGTCGCCAGGAGAGGGTGTCC
TTGGTTCTGGTGTGGGACCTGACAGATGCCCCGTCACTGTCTCACAGACAGGGACTAGTGAGTCCTGTGG
TGGCCTGTGGCCCTCACGGGGCCTCTTTCCTGAAGCCTTGCACCCTCACGTTCAAGCACTGCGCCCAACA
GCCCAGTCAAGCCTGTGCCTACAGCAGCAATACCTCCTTGCTGGATGCCAAGGACTGGAAACCCCTGGGT
CAGCCGGGGACTCATATCTCCAGGGACGAGTGTCGTATCCTGCTCTCTCACTTCAGTCTCTACACCTGCG
TTCTGGAGGCCCCCCTGGGCCAGACAGCCCGCAAGTGGCTGCAGCTGGCCATGTTCTGCTCCCCACTGGT
GCCAGGGCAGACACACCTGCAGCTGCGCGTCTACTTCCTGAACAACACTCCCTGCGCCCTGCAGTGGGCT
ATCACCAATGAACAGCCGCACGGGGGACGCATGCGCGGGCCGTGCCAGCTCTTCGACTTCACTGGGGCCA
GAGCAGACCAGTGCCTGAAGCTCAAGTACATCTCTGAGGGTTGGGAGAATGTGGATGATAGCAGTAGCCA
GCTGGTTCCACATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCTTTCTGCTTCCGGAGAAAGGCA
GCCAATGGGAATGAAGAGTGCTCGGCATTAACCAATGAGATCATTGTCACCATGCACACCTTCCAGGATG
GCTTGGAAACCAAATACGTTGAAATCCTCAGATTCCAGGCATCGGAGGAAGAGACCTGGGCAGTGCCCCC
TCCTGTCTCCCAGCCACCCCTGTGCAACAGGCTGCCCCCAGAGCTCTTTGAGCAGCTGCAGATGTTGTTG
GAGCCCAACAGTGTCACTGGGAATGACTGGCGCAGACTGGCCTCCCACCTGGGTCTCTGTGGCATGAAAA
TCCGGTTCTTGTCCTGCCAGCGCAGTCCCGCCGCGGCCATTCTGGAATTGTTCGAGGAACAGAATGGCAG
CTTGCAGGAGCTGCACTATCTCATGACCTCCATGGAGCGGCTGGACTGCGCCTCTGCCATCCAGAACTAC
CTAAACCGGTCTCCCCGGGGCAGCCCTGACAGGTTGCATGGAGGCACCTGGGAGAACCATGGCCTAGAGC
TGGATGAGAAACTCTAA

Translation (518 aa):
MSPQESSVQPSQFLLLVGIPVASALLLAQCLRWHCCQWLPGTCRKLDDPEEPVSPSTPLPEYELPRQCPA
PTLPEVAAFYQELHMPTQGQTVTRQMMHKLLVFSAREVDHRGGCLILQDTGISLLIPPGAVTVGRQERVS
LVLVWDLTDAPSLSHRQGLVSPVVACGPHGASFLKPCTLTFKHCAQQPSQACAYSSNTSLLDAKDWKPLG
QPGTHISRDECRILLSHFSLYTCVLEAPLGQTARKWLQLAMFCSPLVPGQTHLQLRVYFLNNTPCALQWA
ITNEQPHGGRMRGPCQLFDFTGARADQCLKLKYISEGWENVDDSSSQLVPHLHIWHGKCPFRSFCFRRKA
ANGNEECSALTNEIIVTMHTFQDGLETKYVEILRFQASEEETWAVPPPVSQPPLCNRLPPELFEQLQMLL
EPNSVTGNDWRRLASHLGLCGMKIRFLSCQRSPAAAILELFEEQNGSLQELHYLMTSMERLDCASAIQNY
LNRSPRGSPDRLHGGTWENHGLELDEKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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