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Report for CCDS37330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37330.1 Public Mus musculus 16 Csta2 23 108 98 CCDS HistoryNCBI Gene:76770Re-query CCDS DB by CCDS ID:37330.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063539.6 ENSMUSP00000067712.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063539.6Link to Ensembl Protein Viewer:ENSMUSP00000067712.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063539Re-query CCDS DB by Protein ID:ENSMUSP00000067712
Original member Current member EBI ENSMUST00000187742.6 ENSMUSP00000139876.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187742.6Link to Ensembl Protein Viewer:ENSMUSP00000139876.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187742Re-query CCDS DB by Protein ID:ENSMUSP00000139876
Original member Current member EBI ENSMUST00000187183.6 ENSMUSP00000140745.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187183.6Link to Ensembl Protein Viewer:ENSMUSP00000140745.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187183Re-query CCDS DB by Protein ID:ENSMUSP00000140745
Original member Current member NCBI NM_029733.3 NP_084009.1 Accepted alive Link to Nucleotide Sequence:NM_029733.3Link to Protein Sequence:NP_084009.1Re-query CCDS DB by Nucleotide ID:NM_029733Re-query CCDS DB by Protein ID:NP_084009Link to BLAST:NP_084009.1

Chromosomal Locations for CCDS 37330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36253046 36253111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36255541 36255642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36257247 36257372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGATGCCTGGAGGCTTGTCACGGGCCAGATCTGCCACACCAGAAATCCAGGAGATTGCTAATAAGGTCA
AGTCACTGCTTGAAGAGAAAACCAATGAGAAATATGAAGTGTTCAAAGCTGTTGAGTATAAATCTCAAGT
CGTCGCTGGACAAAATTACTTCATTAAGATGGATGTTGGTGGTGGTTGTTTCCTCCACATAAAAGTCTTC
ACAGGGATTTCTGGAGAAAATGTCTTGGAACTTAGTGGTTACCAGACTAACAAAACCAGGAAAGATGAGC
TGTCCTACTTCTAA

Translation (97 aa):
MMPGGLSRARSATPEIQEIANKVKSLLEEKTNEKYEVFKAVEYKSQVVAGQNYFIKMDVGGGCFLHIKVF
TGISGENVLELSGYQTNKTRKDELSYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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