NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16154.1 Public Mus musculus 2 Ift70a1 23 108 98 CCDS HistoryNCBI Gene:78802Re-query CCDS DB by CCDS ID:16154.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099994.4 ENSMUSP00000097574.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099994.4Link to Ensembl Protein Viewer:ENSMUSP00000097574.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099994Re-query CCDS DB by Protein ID:ENSMUSP00000097574
Original member Current member NCBI NM_030188.3 NP_084464.3 Accepted alive Link to Nucleotide Sequence:NM_030188.3Link to Protein Sequence:NP_084464.3Re-query CCDS DB by Nucleotide ID:NM_030188Re-query CCDS DB by Protein ID:NP_084464Link to BLAST:NP_084464.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084464.3 664 Q99J38 664 100% 0 0

Chromosomal Locations for CCDS 16154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 75979743 75981737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGGCGTGGCAAAGCAGCTCTAAAGTTCCCGACGGTGAGTTCACAGCGGTGGTGTACAGGCTCATCCGCG
AC
TCCCGCTACTCAGAGGCGGTGCAGCTGCTAAGCGCAGAGCTGCAGAGAAGCTCCCGCAGCCGCGCAGG
G
CTGTCGCTGCTGGCCTACTGCTACTACCGCCTGCAGGAGTTCGAGCTCGCTGCAGAGTGCTATGAGCAG
CTG
AGCCAGATGCACCCGGAACTCGAGCAGTACCGCCTGTACCAGGCCCAGGCGCTGTACAAGGCCTGCC
TG
TATCCAGAAGCCACCAGGGTCACCTTCCTCCTGGACAACCCCGCCTATCAGACTCGAGTCCTTCGTCT
C
CAGGCTGCTATCAAGTACAGTGAAGGTGACCTCCCAGGAGCCAGGAGCCTGGTGGAGCAGCTGCTGAGT
GGG
GAAGCTGGAGAAGACAGTGGAGGGGAGAATGACCCAGATGGTTTGGTCAACATGGGTTGTCTGCTCT
AC
AAGGAGGGACACTATGAAGCTGCCTGCTCCAAGTTCTTAGCGGCCCTGCAGGCTTCTGGCTACCAGCC
T
GACCTTTCCTACAACTTGGCATTGGCCTATTACAGCAGTCGGCAGTACGCGCCTGCTCTGAAGCATATC
GCT
GACATCATTGAGCGTGGCATCCGTCAACACCCAGAACTCGGTGTGGGCATGACCACGGAGGGCATTG
AT
GTTCGCAGTGTTGGCAACACTGTAGTCCTTCACCAGACTGCTCTGATTGAAGCTTTCAACCTCAAGGC
A
GCCATAGAGTATCAGCTGAGAAACTTTGAGGTAGCCCAAGAAACTCTCACTGACATGCCTCCTAGAGCA
GAG
GAAGAGCTGGACCCCGTAACCCTCCACAACCAGGCTCTGATGAACATGGATGCCAAGCCCACAGAGG
GC
TTTGAAAAGCTCCAGTTTCTGCTCCAGCAGAACCCCTTTCCCCCAGAGACCTTTGGCAACCTGCTGCT
G
CTCTACTGTAAATATGAGTATTTTGACCTGGCAGCTGATGTCCTGGCAGAAAATGCCCACTTAACTTAC
AAG
TTCCTCACACCCTATCTCTATGACTTCTTGGATGCCATGATCACTTGCCAGACAGCTCCTGAAGAGG
CT
TTCATTAAACTTGATGGGTTGGCTGGCATGCTGACTGAGCAGCTCAGGAGACTCACTAAGCAAGTTCA
A
GAAGCAAGGCATAACAGAGATGATGAAATTATTAAAAAGGCTATGAATGAATATGATGAAACTCTTGAG
AAA
TATATTCCTGTACTGATGGCCCAGGCAAAAATCTACTGGAATCTTGAGAATTACCCAATGGTAGAGA
AG
ATCTTCCGCAAATCTGTGGAATTCTGTAATGACCATGATGTGTGGAAGCTGAATGTGGCCCATGTCCT
C
TTCATGCAGGAGAACAAGTACAAAGAGGCCATTGGTTTCTATGAGCCCATTGTCAAGAAGAATTATGAT
AAC
ATCCTGAGTGTCAGTGCTATTGTGTTAGCCAACCTCTGTGTTTCCTATATCATGACAAGTCAAAACG
AG
GAAGCTGAGGAGCTCATGAGGAAGATTGAGAAGGAGGAGGAACAACTCTCTTATGGTGACCCAGACAA
G
AAAATCTACCACCTTTGCATTGTGAATTTGGTGATAGGAACCCTGTATTGTGCCAAAGGAAACTATGAC
TTT
GGCATCTCTCGGGTTATCAAAAGCTTGGAGCCTTACCATAAAAAGCTAGGCACCGATACGTGGTATT
AT
GCCAAGAGATGCTTCCTGTCCTTACTAGAGAACATGTCAAAGCACATGATAGTGCTTTGTGACGGTGT
T
GTTCAAGAATGTGTCCAGTTTCTAGAGTACTGTGAACTTTATGGTAGAAACATCCCTGCTGTTTTAGAA
CAG
CCCTTAGAGGAAGAAAGAATTCACACCGGGAAGAATACAGTCACATATGAGTCCAGACTGTTGAAAG
CT
TTGATTTATGAGGTCATAGGGTGGAATATGTAG


Translation (664 aa):
MAWQSSSKVPDGEFTAVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQ
L
SQMHPELEQYRLYQAQALYKACLYPEATRVTFLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLS
G
EAGEDSGGENDPDGLVNMGCLLYKEGHYEAACSKFLAALQASGYQPDLSYNLALAYYSSRQYAPALKHI
A
DIIERGIRQHPELGVGMTTEGIDVRSVGNTVVLHQTALIEAFNLKAAIEYQLRNFEVAQETLTDMPPRA
E
EELDPVTLHNQALMNMDAKPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLTY
K
FLTPYLYDFLDAMITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQVQEARHNRDDEIIKKAMNEYDETLE
K
YIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKNYD
N
ILSVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYGDPDKKIYHLCIVNLVIGTLYCAKGNYD
F
GISRVIKSLEPYHKKLGTDTWYYAKRCFLSLLENMSKHMIVLCDGVVQECVQFLEYCELYGRNIPAVLE
Q
PLEEERIHTGKNTVTYESRLLKALIYEVIGWNM




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser