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Report for CCDS4419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4419.1 Public Homo sapiens 5 PRR7 24 110 108 CCDS HistoryNCBI Gene:80758Re-query CCDS DB by CCDS ID:4419.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323249.8 ENSP00000327168.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323249.8Link to Ensembl Protein Viewer:ENSP00000327168.3Re-query CCDS DB by Nucleotide ID:ENST00000323249Re-query CCDS DB by Protein ID:ENSP00000327168
Original member Current member EBI ENST00000502922.5 ENSP00000420872.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502922.5Link to Ensembl Protein Viewer:ENSP00000420872.1Re-query CCDS DB by Nucleotide ID:ENST00000502922Re-query CCDS DB by Protein ID:ENSP00000420872
Original member Current member EBI ENST00000510492.1 ENSP00000421039.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510492.1Link to Ensembl Protein Viewer:ENSP00000421039.1Re-query CCDS DB by Nucleotide ID:ENST00000510492Re-query CCDS DB by Protein ID:ENSP00000421039
Original member Current member NCBI NM_001174101.2 NP_001167572.1 Accepted alive Link to Nucleotide Sequence:NM_001174101.2Link to Protein Sequence:NP_001167572.1Re-query CCDS DB by Nucleotide ID:NM_001174101Re-query CCDS DB by Protein ID:NP_001167572Link to BLAST:NP_001167572.1
Original member Current member NCBI NM_001174102.3 NP_001167573.1 Accepted alive Link to Nucleotide Sequence:NM_001174102.3Link to Protein Sequence:NP_001167573.1Re-query CCDS DB by Nucleotide ID:NM_001174102Re-query CCDS DB by Protein ID:NP_001167573Link to BLAST:NP_001167573.1
Original member Current member NCBI NM_001375593.1 NP_001362522.1 Accepted alive Link to Nucleotide Sequence:NM_001375593.1Link to Protein Sequence:NP_001362522.1Re-query CCDS DB by Nucleotide ID:NM_001375593Re-query CCDS DB by Protein ID:NP_001362522Link to BLAST:NP_001362522.1
Original member Current member NCBI NM_001375594.1 NP_001362523.1 Accepted alive Link to Nucleotide Sequence:NM_001375594.1Link to Protein Sequence:NP_001362523.1Re-query CCDS DB by Nucleotide ID:NM_001375594Re-query CCDS DB by Protein ID:NP_001362523Link to BLAST:NP_001362523.1
Original member Current member NCBI NM_030567.5 NP_085044.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030567.5Link to Protein Sequence:NP_085044.2Re-query CCDS DB by Nucleotide ID:NM_030567Re-query CCDS DB by Protein ID:NP_085044Link to BLAST:NP_085044.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167572.1 274 Q8TB68-1 274 100% 0 0
NP_001167573.1 274 Q8TB68-1 274 100% 0 0
NP_001362522.1 274 Q8TB68-1 274 100% 0 0
NP_001362523.1 274 Q8TB68-1 274 100% 0 0
NP_085044.2 274 Q8TB68-1 274 100% 0 0

Chromosomal Locations for CCDS 4419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177455068 177455494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177455724 177456121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGTGATGTCCCAGGGCACCTACACGTTCCTCACGTGCTTCGCCGGCTTCTGGCTCATCTGGGGTCTCA
TCGTCCTGCTCTGCTGCTTCTGCAGCTTCCTGCGCCGCCGCCTCAAACGGCGCCAGGAGGAGCGACTGCG
CGAGCAGAACCTGCGCGCCCTAGAGCTGGAGCCCCTCGAACTCGAGGGCAGTCTGGCCGGGAGCCCCCCG
GGCCTGGCGCCGCCGCAGCCACCACCACACCGTAGCCGCCTGGAGGCGCCGGCTCACGCGCACTCGCATC
CGCACGTGCACGTGCACCCGCTGCTGCACCACGGGCCCGCGCAGCCGCACGCGCACGCGCACCCACACCC
GCACCACCACGCGCTCCCGCACCCGCCGCCTACGCACCTGTCGGTGCCGCCACGGCCCTGGAGCTACCCG
CGCCAAGCGGAATCGGACATGTCCAAACCACCGTGTTACGAAGAGGCGGTGCTGATGGCAGAGCCGCCGC
CGCCCTATAGCGAGGTGCTCACGGACACGCGCGGCCTCTACCGCAAGATCGTCACGCCCTTCCTGAGTCG
CCGCGACAGCGCGGAGAAGCAGGAGCAGCCGCCTCCCAGCTACAAGCCGCTCTTCCTGGACCGGGGCTAC
ACCTCGGCGCTGCACCTGCCCAGCGCCCCTCGGCCCGCGCCGCCCTGCCCAGCCCTCTGCCTGCAGGCCG
ACCGTGGCCGCCGGGTCTTCCCCAGCTGGACCGACTCAGAGCTCAGCAGCCGCGAGCCCCTGGAGCACGG
AGCTTGGCGTCTGCCGGTCTCCATCCCCTTGTTCGGGAGGACTACAGCCGTATAG

Translation (274 aa):
MVMSQGTYTFLTCFAGFWLIWGLIVLLCCFCSFLRRRLKRRQEERLREQNLRALELEPLELEGSLAGSPP
GLAPPQPPPHRSRLEAPAHAHSHPHVHVHPLLHHGPAQPHAHAHPHPHHHALPHPPPTHLSVPPRPWSYP
RQAESDMSKPPCYEEAVLMAEPPPPYSEVLTDTRGLYRKIVTPFLSRRDSAEKQEQPPPSYKPLFLDRGY
TSALHLPSAPRPAPPCPALCLQADRGRRVFPSWTDSELSSREPLEHGAWRLPVSIPLFGRTTAV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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