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Report for CCDS38471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38471.1 Public Mus musculus 3 Fcrl2 23 108 98 CCDS HistoryNCBI Gene:80891Re-query CCDS DB by CCDS ID:38471.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090986.10 ENSMUSP00000088508.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090986.10Link to Ensembl Protein Viewer:ENSMUSP00000088508.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090986Re-query CCDS DB by Protein ID:ENSMUSP00000088508
Original member NCBI NM_030707.3 NP_109632.2 Updated not alive Link to Nucleotide Sequence:NM_030707.3Link to Protein Sequence:NP_109632.2Re-query CCDS DB by Nucleotide ID:NM_030707Re-query CCDS DB by Protein ID:NP_109632
Current member NCBI NM_030707.4 NP_109632.2 Accepted alive Link to Nucleotide Sequence:NM_030707.4Link to Protein Sequence:NP_109632.2Re-query CCDS DB by Nucleotide ID:NM_030707Re-query CCDS DB by Protein ID:NP_109632Link to BLAST:NP_109632.2

Chromosomal Locations for CCDS 38471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87251377 87251396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87252436 87252756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87256632 87256910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87257308 87257616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87258866 87259147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87259366 87259632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87262179 87262199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87263445 87263475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGCCTCTGTGCTTGCTGCTTCTGGTCTTCGCTCCTGTCGGAGTCCAGTCCGACTGGTTGAGCATCAGCC
TTCCACACCGTTCTTATGAAGGAGACCAAGTAGTTATAAGCTGCACAGGGAAAAATAATGGTGACATAAA
GAGACTGAAGTACTTCAAGGATGGATATCACATAGAAACTTACAGCAGTGCTTCAAGCTACACCATTAGG
AATGCAAGACGCGGTGACAGTGGCTCCTATTCCTGTAAGGCAGATAGGAAATTTTTCCTATTTATAGACA
CAACAGAAGAAACAGGATCTAAGTGGCTGAATGTCCAAGAGCTGTTTCCAGCACCTGGGCTGACAGCCAG
CCCCCTGCAGCCCGTAGAGGGGAGTTCAGTGACCCTGTCCTGCAACACCTGGCTCCCTTCAGATAGGGCA
ACGACCCAGCTACGCTATTCCTTCTTCAAAGATGGCCACACTTTGCAATCGGGCTGGACCTCATCAAAAT
TTACCATCTCAGCAATATCGAAGGAAGACTCAGGAAATTACTGGTGTGAAGCAATGACTGCCTCTCGCAG
TGTCTCAAAGCAGAGTCACCGGTCCTACATAGATGTAGAGAGGATCCCTGTATCTCAAGTCACCATGGAG
ATCCAGCCTTCAAGAGGCTGGGGAGTTGAAGGGGAGCCACTGGTCGTTGAAGGGGAGCCCCTGGTCCTTG
CTTGTTCTGTGGCTAAAGGCACTGGGCTAATCACATTCTCCTGGCATAGGCAGGACACTAAGGAAAGTGT
GGGGAAGAAAAGTCAGCGTTCCCAGAGAGTGGAGCTGGAGATCCCTACTATCAGGGAAAGCCATGCTGGG
GGGTACTACTGCACAGCAGACAACAACTACGGCCTGATCCAGAGTGCAATCGTGAACATCACCGTGAAAA
TTCCAGTGTTGAACCCGCTCCTCTCCATCAGTGTTCCTGGGGTCTTGCCCTTCATCGGAGATGTGGCGGA
GCTTCACTGTGAAGACAAGAGAGCATCTCCTCCGGTTCTCTACTGGTTTTATCATGAAAATATCACTCTG
GCTAACACCTCGGCACCTTTTGGAGGAAAGGCATCCTTTAAGCTCTCTCTGACTGCAGGGCATTCTGGGA
ACTACTCTTGTGAGGCTGAAAACGCCTGGGGTACCAAGCGCAGTGAGGTGGTAACGCTCAATGTCACAGA
GCCCCCACCCAAAGTGCGTTTGGTGAATGGCCCCCACCACTGTGAAGGACGCGTAGAGGTTGAACAGGAA
GGTCGCTGGGGCACTGTATGTGATGATGGCTGGGACATGAGGGATGTGGCTGTGGTGTGCCGAGAGCTGG
GCTGTGGAGCAGCCCAACACACACCTATAGCCATGCTGTATCCACCAGCAGTTGATGAAGCTCTGCCTGT
GCTCATTCAGGTAGCCCTGTGCAATGGCACAGAAAAGACCCTGGCTGAATGTGACCAGGTTGAGGCCTTT
GATTGTGGACATGATGAGGATGCTGGAGCTGTGTGTGAAGTCTTACCCAGCACTTTCTGA

Translation (509 aa):
MPLCLLLLVFAPVGVQSDWLSISLPHRSYEGDQVVISCTGKNNGDIKRLKYFKDGYHIETYSSASSYTIR
NARRGDSGSYSCKADRKFFLFIDTTEETGSKWLNVQELFPAPGLTASPLQPVEGSSVTLSCNTWLPSDRA
TTQLRYSFFKDGHTLQSGWTSSKFTISAISKEDSGNYWCEAMTASRSVSKQSHRSYIDVERIPVSQVTME
IQPSRGWGVEGEPLVVEGEPLVLACSVAKGTGLITFSWHRQDTKESVGKKSQRSQRVELEIPTIRESHAG
GYYCTADNNYGLIQSAIVNITVKIPVLNPLLSISVPGVLPFIGDVAELHCEDKRASPPVLYWFYHENITL
ANTSAPFGGKASFKLSLTAGHSGNYSCEAENAWGTKRSEVVTLNVTEPPPKVRLVNGPHHCEGRVEVEQE
GRWGTVCDDGWDMRDVAVVCRELGCGAAQHTPIAMLYPPAVDEALPVLIQVALCNGTEKTLAECDQVEAF
DCGHDEDAGAVCEVLPSTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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