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Report for CCDS41559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41559.1 Public Homo sapiens 10 SLC25A28 24 110 108 CCDS HistoryNCBI Gene:81894Re-query CCDS DB by CCDS ID:41559.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370495.6 ENSP00000359526.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370495.6Link to Ensembl Protein Viewer:ENSP00000359526.4Re-query CCDS DB by Nucleotide ID:ENST00000370495Re-query CCDS DB by Protein ID:ENSP00000359526
Original member Current member NCBI NM_031212.4 NP_112489.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031212.4Link to Protein Sequence:NP_112489.3Re-query CCDS DB by Nucleotide ID:NM_031212Re-query CCDS DB by Protein ID:NP_112489Link to BLAST:NP_112489.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112489.3 364 Q96A46-1 364 100% 0 0

Chromosomal Locations for CCDS 41559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 99610849 99611366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99612543 99612599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99613696 99613924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99620045 99620335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGAGTTGGAGGGGCGGGGTGCTGGCGGTGTGGCGGGGGGGCCGGCGGCAGGGCCCGGGCGGAGCCCCG
GGGAGTCGGCGCTGCTGGACGGGTGGCTGCAGCGGGGCGTGGGCCGGGGGGCCGGCGGCGGGGAGGCCGG
GGCCTGCAGGCCCCCGGTACGACAAGATCCGGACTCCGGCCCGGACTACGAGGCGCTGCCGGCTGGAGCC
ACTGTCACCACGCACATGGTGGCAGGCGCCGTGGCAGGGATCCTGGAGCACTGCGTGATGTACCCCATCG
ACTGCGTCAAGACCCGGATGCAGAGTCTACAGCCTGACCCAGCTGCCCGCTATCGCAATGTGTTGGAGGC
CCTCTGGAGGATTATAAGAACGGAGGGCCTATGGAGGCCCATGAGGGGGCTGAACGTCACAGCAACAGGC
GCAGGGCCTGCCCACGCCCTTTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGATGTAATCC
ACCCTGGGGGCAATAGCCATATTGCCAATGGTGCGGCCGGGTGTGTGGCAACATTACTTCATGATGCAGC
CATGAACCCTGCGGAAGTGGTCAAGCAGAGGATGCAGATGTACAACTCACCATACCACCGGGTGACAGAC
TGTGTACGGGCAGTGTGGCAAAATGAAGGGGCCGGGGCCTTTTACCGCAGCTACACCACCCAGCTGACCA
TGAACGTTCCTTTCCAAGCCATTCACTTCATGACCTATGAATTCCTGCAGGAGCACTTTAACCCCCAGAG
ACGGTACAACCCAAGCTCCCACGTCCTCTCTGGAGCTTGCGCAGGAGCTGTAGCTGCCGCAGCCACAACC
CCACTGGACGTTTGCAAAACACTGCTCAACACCCAGGAGTCCTTGGCTTTGAACTCACACATTACAGGAC
ATATCACAGGCATGGCTAGTGCCTTCAGGACGGTATATCAAGTAGGTGGGGTGACCGCCTATTTCCGAGG
GGTGCAGGCCAGAGTAATTTACCAGATCCCCTCCACAGCCATCGCATGGTCTGTGTATGAGTTCTTCAAA
TACCTAATCACTAAAAGGCAAGAAGAGTGGAGGGCTGGCAAGTGA

Translation (364 aa):
MELEGRGAGGVAGGPAAGPGRSPGESALLDGWLQRGVGRGAGGGEAGACRPPVRQDPDSGPDYEALPAGA
TVTTHMVAGAVAGILEHCVMYPIDCVKTRMQSLQPDPAARYRNVLEALWRIIRTEGLWRPMRGLNVTATG
AGPAHALYFACYEKLKKTLSDVIHPGGNSHIANGAAGCVATLLHDAAMNPAEVVKQRMQMYNSPYHRVTD
CVRAVWQNEGAGAFYRSYTTQLTMNVPFQAIHFMTYEFLQEHFNPQRRYNPSSHVLSGACAGAVAAAATT
PLDVCKTLLNTQESLALNSHITGHITGMASAFRTVYQVGGVTAYFRGVQARVIYQIPSTAIAWSVYEFFK
YLITKRQEEWRAGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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