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Report for CCDS54010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54010.1 Public Homo sapiens 16 CAPNS2 24 110 108 CCDS HistoryNCBI Gene:84290Re-query CCDS DB by CCDS ID:54010.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54010.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457326.3 ENSP00000400882.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000457326.3Link to Ensembl Protein Viewer:ENSP00000400882.2Re-query CCDS DB by Nucleotide ID:ENST00000457326Re-query CCDS DB by Protein ID:ENSP00000400882
Original member Current member NCBI NM_032330.3 NP_115706.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032330.3Link to Protein Sequence:NP_115706.1Re-query CCDS DB by Nucleotide ID:NM_032330Re-query CCDS DB by Protein ID:NP_115706Link to BLAST:NP_115706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115706.1 248 Q96L46 248 100% 0 0

Chromosomal Locations for CCDS 54010.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55566757 55567503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTTTCTTGCAAAGGCTCTATTGGAAGGAGCAGATCGAGGTCTTGGAGAAGCTCTTGGAGGCCTCTTTG
GAGGAGGTGGTCAGAGAAGAGAAGGAGGAGGAAGAAATATTGGAGGGATAGTTGGAGGAATTGTGAATTT
TATCAGTGAGGCTGCAGCAGCTCAGTATACTCCAGAACCGCCTCCCACTCAGCAGCATTTCACCAGTGTG
GAGGCCTCAGAAAGTGAGGAAGTTAGGCGATTTCGGCAACAATTTACACAGCTGGCTGGACCAGACATGG
AGGTGGGTGCCACTGATCTGATGAATATTCTCAACAAAGTCCTTTCTAAGCACAAAGATCTTAAGACTGA
CGGTTTTAGTCTTGACACCTGCCGGAGCATTGTGTCTGTCATGGACAGTGACACGACTGGTAAGCTGGGC
TTTGAAGAATTTAAGTATCTGTGGAACAACATCAAGAAATGGCAGTGTGTTTATAAGCAGTATGACAGGG
ACCATTCTGGGTCTCTGGGAAGTTCTCAGCTGCGGGGAGCTCTGCAGGCCGCAGGCTTCCAGCTAAATGA
ACAACTTTACCAAATGATTGTCCGCCGGTATGCTAATGAAGATGGAGATATGGATTTTAACAATTTCATC
AGCTGCTTGGTCCGCCTGGATGCCATGTTTCGTGCCTTCAAGTCTCTGGATAGAGATAGAGATGGCCTGA
TTCAAGTGTCTATCAAAGAATGGCTGCAGTTGACCATGTATTCCTGA

Translation (248 aa):
MFLAKALLEGADRGLGEALGGLFGGGGQRREGGGRNIGGIVGGIVNFISEAAAAQYTPEPPPTQQHFTSV
EASESEEVRRFRQQFTQLAGPDMEVGATDLMNILNKVLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKLG
FEEFKYLWNNIKKWQCVYKQYDRDHSGSLGSSQLRGALQAAGFQLNEQLYQMIVRRYANEDGDMDFNNFI
SCLVRLDAMFRAFKSLDRDRDGLIQVSIKEWLQLTMYS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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