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Report for CCDS14524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14524.1 Public Homo sapiens X CLDN2 24 110 108 CCDS HistoryNCBI Gene:9075Re-query CCDS DB by CCDS ID:14524.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14524.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336803.2 ENSP00000336571.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336803.2Link to Ensembl Protein Viewer:ENSP00000336571.1Re-query CCDS DB by Nucleotide ID:ENST00000336803Re-query CCDS DB by Protein ID:ENSP00000336571
Original member Current member EBI ENST00000541806.6 ENSP00000441283.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541806.6Link to Ensembl Protein Viewer:ENSP00000441283.1Re-query CCDS DB by Nucleotide ID:ENST00000541806Re-query CCDS DB by Protein ID:ENSP00000441283
Original member Current member EBI ENST00000540876.1 ENSP00000443230.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540876.1Link to Ensembl Protein Viewer:ENSP00000443230.1Re-query CCDS DB by Nucleotide ID:ENST00000540876Re-query CCDS DB by Protein ID:ENSP00000443230
Original member Current member NCBI NM_001171092.1 NP_001164563.1 Accepted alive Link to Nucleotide Sequence:NM_001171092.1Link to Protein Sequence:NP_001164563.1Re-query CCDS DB by Nucleotide ID:NM_001171092Re-query CCDS DB by Protein ID:NP_001164563Link to BLAST:NP_001164563.1
Original member Current member NCBI NM_001171095.2 NP_001164566.1 Accepted alive Link to Nucleotide Sequence:NM_001171095.2Link to Protein Sequence:NP_001164566.1Re-query CCDS DB by Nucleotide ID:NM_001171095Re-query CCDS DB by Protein ID:NP_001164566Link to BLAST:NP_001164566.1
Original member Current member NCBI NM_020384.4 NP_065117.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020384.4Link to Protein Sequence:NP_065117.1Re-query CCDS DB by Nucleotide ID:NM_020384Re-query CCDS DB by Protein ID:NP_065117Link to BLAST:NP_065117.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164563.1 230 P57739 230 100% 0 0
NP_001164566.1 230 P57739 230 100% 0 0
NP_065117.1 230 P57739 230 100% 0 0

Chromosomal Locations for CCDS 14524.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106928229 106928921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGCCTCTCTTGGCCTCCAACTTGTGGGCTACATCCTAGGCCTTCTGGGGCTTTTGGGCACACTGGTTG
CCATGCTGCTCCCCAGCTGGAAAACAAGTTCTTATGTCGGTGCCAGCATTGTGACAGCAGTTGGCTTCTC
CAAGGGCCTCTGGATGGAATGTGCCACACACAGCACAGGCATCACCCAGTGTGACATCTATAGCACCCTT
CTGGGCCTGCCCGCTGACATCCAGGCTGCCCAGGCCATGATGGTGACATCCAGTGCAATCTCCTCCCTGG
CCTGCATTATCTCTGTGGTGGGCATGAGATGCACAGTCTTCTGCCAGGAATCCCGAGCCAAAGACAGAGT
GGCGGTAGCAGGTGGAGTCTTTTTCATCCTTGGAGGCCTCCTGGGATTCATTCCTGTTGCCTGGAATCTT
CATGGGATCCTACGGGACTTCTACTCACCACTGGTGCCTGACAGCATGAAATTTGAGATTGGAGAGGCTC
TTTACTTGGGCATTATTTCTTCCCTGTTCTCCCTGATAGCTGGAATCATCCTCTGCTTTTCCTGCTCATC
CCAGAGAAATCGCTCCAACTACTACGATGCCTACCAAGCCCAACCTCTTGCCACAAGGAGCTCTCCAAGG
CCTGGTCAACCTCCCAAAGTCAAGAGTGAGTTCAATTCCTACAGCCTGACAGGGTATGTGTGA

Translation (230 aa):
MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDIYSTL
LGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVAGGVFFILGGLLGFIPVAWNL
HGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGIILCFSCSSQRNRSNYYDAYQAQPLATRSSPR
PGQPPKVKSEFNSYSLTGYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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