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Report for CCDS10557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10557.1 Public Homo sapiens 16 NPIPA1 24 110 108 CCDS HistoryNCBI Gene:9284Re-query CCDS DB by CCDS ID:10557.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10557.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328085.10 ENSP00000331843.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328085.10Link to Ensembl Protein Viewer:ENSP00000331843.6Re-query CCDS DB by Nucleotide ID:ENST00000328085Re-query CCDS DB by Protein ID:ENSP00000331843
Original member Current member NCBI NM_006985.4 NP_008916.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006985.4Link to Protein Sequence:NP_008916.2Re-query CCDS DB by Nucleotide ID:NM_006985Re-query CCDS DB by Protein ID:NP_008916Link to BLAST:NP_008916.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008916.2 350 Q9UND3 350 100% 0 0

Chromosomal Locations for CCDS 10557.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14937443 14937505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14941812 14941940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14945574 14945673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14945837 14945981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14948930 14949037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14950050 14950110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14950220 14950255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14951615 14952025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGTTTTGTTGCTTAGGATATGAATGGCTGAGCGGAGGCTGTAAAACCTGGCACTCTGCTTGGGTTATCA
ATACTCTGGCTGACCATCGTCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACTTATCATTACTGT
GTTTCTGAGAAGTTATAAATTTGCCATCTCCCTCTGCACAAGTTACCTTTGTGTGTCTTTCCTGAAGACT
ATCTTCCCGTCTCAAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCAGGAGGTCCAACCGCC
GTAGACAGGAAGGAATTAAAATTGTCCTGGAAGACATCTTTACTTTATGGAGACAGGTGGAAACCAAAGT
TCGAGCTAAAATCCGTAAGATGAAGGTGACAACAAAAGTCAACCGTCATGACAAAATCAATGGAAAGAGG
AAGACCGCCAAAGAACATCTGAGGAAACTAAGCATGAAAGAACGTGAGCACGGAGAAAAGGAGAGGCAGG
TGTCAGAGGCAGAGGAAAATGGGAAATTGGATATGAAAGAAATACACACCTACATGGAAATGTTTCAACG
TGCGCAAGCGTTGCGGCGGCGGGCAGAGGACTACTACAGATGCAAAATCACCCCTTCTGCAAGAAAGCCT
CTTTGCAACCGGGTCAGAATGGCGGCAGTGGAGCATCGTCATTCTTCAGGATTGCCCTACTGGCCCTACC
TCACAGCTGAAACTTTAAAAAACAGGATGGGCCACCAGCCACCTCCTCCAACTCAACAACATTCTATAAT
TGATAACTCCCTGAGCCTCAAGACACCTTCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCTACCC
TCAGCGGATGATAATCTCAAGACACCTGCGGAGTGTCTGCTCTATCCCCTTCCACCCTCAGCGGATGATA
ATCTCAAGACACCTCCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGTGGATGATAA
TCTCAAGACACCTCCCGAGTGTGTCTGCTCACTCCCCTTCCACCCTCAGCGGATGATAATCTCAAGAAAC
TAA

Translation (350 aa):
MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKT
IFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKR
KTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKP
LCNRVRMAAVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECLLTPLPPSALP
SADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPSAPPSVDDNLKTPPECVCSLPFHPQRMIISRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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