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Report for CCDS20122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20122.1 Public Mus musculus 6 Gpnmb 23 108 98 CCDS HistoryNCBI Gene:93695Re-query CCDS DB by CCDS ID:20122.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031840.9 ENSMUSP00000031840.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031840.9Link to Ensembl Protein Viewer:ENSMUSP00000031840.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031840Re-query CCDS DB by Protein ID:ENSMUSP00000031840
Original member Current member NCBI NM_053110.4 NP_444340.3 Accepted alive Link to Nucleotide Sequence:NM_053110.4Link to Protein Sequence:NP_444340.3Re-query CCDS DB by Nucleotide ID:NM_053110Re-query CCDS DB by Protein ID:NP_444340Link to BLAST:NP_444340.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444340.3 574 Q99P91 574 100% 0 0

Chromosomal Locations for CCDS 20122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49036723 49036792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49042767 49042919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49043997 49044140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49045305 49045478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49047294 49047452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49047736 49048101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49050410 49050508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49051024 49051126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49051818 49052026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49055621 49055714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49056161 49056314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGAAAGTCTCTGCGGGGTCCTGGGATTTCTGCTGCTGGCTGCAGGACTGCCTCTCCAGGCTGCCAAGC
GA
TTTCGTGATGTGCTGGGCCATGAACAGTATCCCGATCACATGAGAGAGCACAACCAATTACGTGGCTG
G
TCTTCGGATGAAAATGAATGGGATGAACACCTGTATCCAGTGTGGAGGAGGGGAGACGGCAGGTGGAAG
GAC
TCCTGGGAAGGAGGCCGTGTGCAGGCAGTCCTGACCAGTGACTCACCGGCTCTGGTGGGTTCCAATA
TC
ACTTTTGTGGTGAACCTGGTGTTCCCCAGATGCCAGAAGGAAGATGCTAATGGCAATATCGTCTATGA
G
AAGAACTGCAGGAATGATTTGGGACTGACATCTGACCTGCATGTCTACAACTGGACTGCAGGGGCAGAT
GAT
GGTGACTGGGAAGATGGCACCAGCCGAAGCCAGCATCTCAGGTTCCCGGACAGGAGGCCCTTCCCTC
GC
CCCCATGGATGGAAGAAATGGAGCTTTGTCTACGTCTTTCACACACTTGGCCAGTATTTCCAAAAACT
G
GGTCGGTGTTCAGCACGGGTTTCTATAAACACAGTCAACTTGACAGCTGGCCCTCAGGTCATGGAAGTG
ACT
GTCTTTCGAAGATACGGCCGGGCATACATTCCCATCTCGAAGGTGAAAGATGTGTATGTGATAACAG
AT
CAGATCCCTGTATTCGTGACCATGTCCCAGAAGAATGACAGGAACTTGTCTGATGAGATCTTCCTCAG
A
GACCTCCCCATCGTCTTCGATGTCCTCATTCATGATCCCAGCCACTTCCTCAACGACTCTGCCATTTCC
TAC
AAGTGGAACTTTGGGGACAACACTGGCCTGTTTGTCTCCAACAATCACACTTTGAATCACACTTATG
TG
CTCAATGGAACCTTCAACCTTAACCTCACCGTGCAAACTGCAGTGCCCGGGCCATGCCCTCCCCCTTC
G
CCTTCGACTCCGCCTCCACCTTCAACTCCGCCCTCACCTCCGCCCTCACCTCTGCCCACATTATCAACA
CCT
AGCCCCTCTTTAATGCCTACTGGTTACAAATCCATGGAGCTGAGTGACATTTCCAATGAAAACTGCC
GA
ATAAACAGATATGGCTACTTCAGAGCCACCATCACAATTGTAGAGGGGATCCTGGAAGTCAGCATCAT
G
CAGATAGCAGATGTCCCCATGCCCACACCGCAGCCTGCCAACTCCCTGATGGACTTCACTGTGACCTGC
AAA
GGGGCCACCCCCATGGAAGCCTGTACGATCATCTCCGACCCCACCTGCCAGATCGCCCAGAACCGGG
TC
TGCAGCCCTGTGGCTGTGGATGGGCTGTGCCTGCTGTCTGTGAGAAGAGCCTTCAATGGGTCTGGCAC
C
TACTGTGTGAATTTCACTCTGGGAGATGATGCAAGCCTGGCCCTCACCAGCACCCTGATCTCTATCCCT
GGC
AAAGACCCAGACTCCCCTCTGAGAGCAGTGAATGGTGTCCTGATCTCCATCGGCTGCCTGGCTGTGC
TT
GTCACCATGGTTACCATCTTGCTGTACAAAAAACACAAGGCGTACAAGCCAATAGGAAACTGCCCCAG
G
AACACGGTCAAGGGCAAGGGCCTGAGTGTTCTCCTCAGTCACGCGAAAGCCCCGTTCTTCCGAGGAGAC
CAG
GAGAAGGATCCATTGCTCCAGGACAAGCCAAGGACACTCTAA


Translation (574 aa):
MESLCGVLGFLLLAAGLPLQAAKRFRDVLGHEQYPDHMREHNQLRGWSSDENEWDEHLYPVWRRGDGRWK
D
SWE
GGRVQAVLTSDSPALVGSNITFVVNLVFPRCQKEDANGNIVYEKNCRNDLGLTSDLHVYNWTAGAD
D
GDWEDGTSRSQHLRFPDRRPFPRPHGWKKWSFVYVFHTL
GQYFQKLGRCSARVSINTVNLTAGPQVMEV
T
VFRRYGRAYIPISKVKDVYVIT
DQIPVFVTMSQKNDRNLSDEIFLRDLPIVFDVLIHDPSHFLNDSAIS
Y
KWNFGDNTGLFVSNNHTLNHTYVLNGTFNLNLTVQTAVPGPCPPPSPSTPPPPSTPPSPPPSPLPTLST
P
SPSL
MPTGYKSMELSDISNENCRINRYGYFRATITIVEGILEVSIMQIADVPMPTPQPANSLMDFTVTC
K
G
ATPMEACTIISDPTCQIAQNRVCSPVAVDGLCLLSVRRAFNGSGTYCVNFTLGDDASLALTSTLISIP
G
K
DPDSPLRAVNGVLISIGCLAVLVTMVTILLYKKHKAYKPIGNCPRNTVKGKGLSVLLSHAKAPFFRGD
Q
EKDPLLQDKPRTL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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