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Report for CCDS18708.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18708.2 Public Mus musculus 4 Tinagl1 23 108 98 CCDS HistoryNCBI Gene:94242Re-query CCDS DB by CCDS ID:18708.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18708.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. The CDS extension adds 51 aa to the N-terminus of the protein and includes a predicted signal peptide. The length of the extension and the signal peptide are supported by orthologs.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18708.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030560.8 ENSMUSP00000030560.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030560.8Link to Ensembl Protein Viewer:ENSMUSP00000030560.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030560Re-query CCDS DB by Protein ID:ENSMUSP00000030560
Original member Current member EBI ENSMUST00000105998.7 ENSMUSP00000101620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105998.7Link to Ensembl Protein Viewer:ENSMUSP00000101620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105998Re-query CCDS DB by Protein ID:ENSMUSP00000101620
Original member Current member EBI ENSMUST00000105999.8 ENSMUSP00000101621.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105999.8Link to Ensembl Protein Viewer:ENSMUSP00000101621.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105999Re-query CCDS DB by Protein ID:ENSMUSP00000101621
Original member Current member NCBI NM_001168333.1 NP_001161805.1 Accepted alive Link to Nucleotide Sequence:NM_001168333.1Link to Protein Sequence:NP_001161805.1Re-query CCDS DB by Nucleotide ID:NM_001168333Re-query CCDS DB by Protein ID:NP_001161805Link to BLAST:NP_001161805.1
Original member Current member NCBI NM_023476.3 NP_075965.2 Accepted alive Link to Nucleotide Sequence:NM_023476.3Link to Protein Sequence:NP_075965.2Re-query CCDS DB by Nucleotide ID:NM_023476Re-query CCDS DB by Protein ID:NP_075965Link to BLAST:NP_075965.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161805.1 466 Q99JR5 466 100% 0 0
NP_075965.2 466 Q99JR5 466 100% 0 0

Chromosomal Locations for CCDS 18708.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130166065 130166205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130166303 130166348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130166902 130167025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130167256 130167301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130167405 130167594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130167698 130167848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130167930 130168053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130169019 130169133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130169311 130169403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130172932 130172995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130173893 130174199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGTGGGGATGTTGGCTGGGGCTGCTCTTGCTGCTGCTGGCTGGCCAGGCTGCCCTGGAGGCCCGGCGGA
GTCGTTGGCGCAGGGAGCTGGCGCCAGGGCTGCACCTGCGGGGCATCCGGGACGCCGGTGGCAGATACTG
CCAAGAGCAGGACATGTGCTGTCGAGGCCGTGCTGACGAGTGTGCCCTGCCCTACCTGGGAGCCACCTGT
TACTGTGACCTCTTCTGCAACCGCACCGTCTCTGACTGCTGCCCCGACTTCTGGGACTTCTGCCTCGGGA
TTCCACCCCCCTTCCCTCCCGTCCAAGGGTGCATGCATGGGGGCCGGATCTACCCAGTCTTCGGAACCTA
CTGGGACAACTGCAATCGATGCACCTGCCATGAGGGAGGGCATTGGGAGTGCGACCAGGAGCCGTGTCTA
GTGGACCCAGACATGATTAAAGCCATCAACCGAGGCAACTACGGGTGGCAGGCTGGGAACCACAGTGCCT
TCTGGGGCATGACCCTGGATGAGGGCATTCGCTACCGCCTGGGCACAATCCGCCCATCCTCCACTGTCAT
GAATATGAATGAGATTTATACGGTGCTGGGCCAAGGGGAAGTGCTACCCACTGCCTTTGAAGCTTCAGAG
AAGTGGCCCAACCTGATCCACGAGCCATTGGACCAGGGCAATTGTGCAGGTTCCTGGGCTTTCTCCACAG
CAGCTGTCGCATCTGATCGCGTCTCTATCCATTCTTTGGGACACATGACACCCATCCTATCACCGCAAAA
CCTGCTGTCCTGTGATACCCACCACCAGCAGGGCTGCCGAGGTGGGCGTCTTGATGGCGCTTGGTGGTTC
CTGCGGCGCCGCGGGGTGGTGTCTGACAACTGTTACCCATTCTCCGGCCGTGAGCAGAACGAGGCCAGCC
CCACTCCTCGTTGTATGATGCACAGCCGCGCCATGGGGCGGGGCAAGCGCCAAGCCACTTCCCGCTGCCC
CAATGGTCAGGTTGATTCCAACGACATCTACCAGGTCACGCCTGCCTACCGCCTGGGCTCTGATGAGAAG
GAGATCATGAAGGAGCTAATGGAAAACGGCCCTGTTCAAGCACTCATGGAAGTACACGAGGACTTCTTCT
TGTACCAGCGTGGCATCTACAGCCACACACCTGTAAGCCAGGGGAGGCCGGAGCAGTACCGCAGACATGG
GACTCACTCAGTCAAGATCACTGGGTGGGGAGAAGAGACGCTGCCAGACGGAAGGACCATTAAGTACTGG
ACTGCTGCCAACTCGTGGGGCCCATGGTGGGGTGAAAGGGGCCACTTCCGGATCGTGCGTGGCACCAACG
AGTGCGACATCGAGACCTTCGTGCTGGGCGTCTGGGGTCGCGTGGGAATGGAGGACATGGGGCACCACTG
A

Translation (466 aa):
MWGCWLGLLLLLLAGQAALEARRSRWRRELAPGLHLRGIRDAGGRYCQEQDMCCRGRADECALPYLGATC
YCDLFCNRTVSDCCPDFWDFCLGIPPPFPPVQGCMHGGRIYPVFGTYWDNCNRCTCHEGGHWECDQEPCL
VDPDMIKAINRGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSTVMNMNEIYTVLGQGEVLPTAFEASE
KWPNLIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSCDTHHQQGCRGGRLDGAWWF
LRRRGVVSDNCYPFSGREQNEASPTPRCMMHSRAMGRGKRQATSRCPNGQVDSNDIYQVTPAYRLGSDEK
EIMKELMENGPVQALMEVHEDFFLYQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYW
TAANSWGPWWGERGHFRIVRGTNECDIETFVLGVWGRVGMEDMGHH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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